Neisseria meningitidis 053442 (serogroup C): NMCC_1194
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Entry
NMCC_1194 CDS
T00633
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nmn
Neisseria meningitidis 053442 (serogroup C)
Pathway
nmn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nmn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NMCC_1194 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nmn03400
]
NMCC_1194 (mfd)
Enzymes [BR:
nmn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NMCC_1194 (mfd)
DNA repair and recombination proteins [BR:
nmn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NMCC_1194 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
ERCC3_RAD25_C
UB2H
AAA_30
HemY_N
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
ABX73368
LinkDB
All DBs
Position
1183754..1187869
Genome browser
AA seq
1371 aa
AA seq
DB search
MTYPIPKPREKSRWSNLSQGSLPLALARYLPHKRLKVVLTQDAEQALRLQTAWRFFRPHD
TAVFLPDWETLPYERFSPHQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAG
RTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSEMPYRIDLF
DDEIDSIKTFDTDTQRTISPVSEIRLLSAHEFPTDSEAQKIFRSRFREEVDGNPNDAAVY
KAVSNGHFGAGVEYYLPLFFENELETLFDYIGEDALFVSLGDVHAEANRFWSDVKSRYAM
AQGDETYPPLLPQHLYLSSDVFAGRLKNYGQVLPDIFGVEHTLPNVAVNRQADEPLQALK
DFQTAFKGRILLCAESLGRRETMLGFLQQNGLKAKPVSDWQGFLSAHEPLMITVAPLAYG
FKLGGLQSPNQQQTTSASEGEGDAVTDQTEFSAAATNPLPSPLPQEREQSAAAVSTESSL
PPGKSNLHGQIQQQPAPSPVGEGWGEGKAVAAQTEFPASATNPLPNPLPQEREQSAAVVS
DSLKAAAVSTESSLPPGKSNLHGQIQQQPAPSPVGEGWGEGKAVAAQTEFSASATNPLPS
PLPQEREQSAAVVSDSLKAAAVSTESSLPPGKSNLHGQIQQQPAPSPVGEGWGEGKAVAA
QSAIAVITESDLYQYVARSRVHNRRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMG
LVTMDLGGETNEMMLLEYAGEAQLYVPVSQLHLISRYSGQAHENIALHKLGSGAWNKAKR
KAAEKARDTAAELLNLYARRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKD
LTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFAD
FPVKVASLSRFNNSKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFG
VRQKEQLKRLRANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE
GSVREAVLRELKRGGQVFFLHNEVDTIENMRERLETLLPEARIGVAHGQLRERELEQVMR
DFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLL
TPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSGEMIQVGFTLYTE
MLKQAVRDLKKGRQPDLDAPLGITTEIKLHSPALLPESYCPDIHERLVLYKRLAVCETVQ
QINAIHEELVDRFGLPEQPVKTLIESHHLRLMAKELGIDAIDAAGEAVTVTFGKNNNVDP
TEIILLIQNDKKYRLAGADKLRFTAEMENIEVRINTVKNVLKTLQNRCLPK
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atgacctaccccatccccaaaccccgtgaaaaatcccgttggtccaatctttcgcaaggc
tcgctgcccttggctttggcgcgttatctgccgcataagcggctcaaggtcgtgctgacc
caagatgcggaacaggcgctacgccttcagacggcatggcggtttttccgtccgcacgac
acggcggtgttcctgccggactgggaaacgctgccttacgagcgtttttcgccgcatcag
gatttggtgtcggaacggctgtcggcgttgtggcagattaagagcggcgcggcggacgtg
ttgttcgtgccggttgccacggcgatgcagaagctgccgcccgtgccgtttctggcaggg
cgcacgttttggctgaaaacagggcagactttggatataggccgtctgaaaaccgatttg
gtagatgcgggctacaaccatgtttcccatgttgttgcggcgggcgagtttgccgtgcgc
ggcggcattgtcgatttgttccccatgggcagcgaaatgccctaccgcatcgatttgttt
gacgatgaaatcgacagcatcaaaacctttgatacggacacgcagcgcaccatctccccc
gtttccgaaatccgcctgctgtcggcgcacgaattccccaccgacagcgaggcgcaaaaa
atcttccgcagccgcttccgcgaggaagtcgatggtaatccgaacgatgcggctgtatac
aaagcagtaagcaacggccacttcggtgcgggcgtggaatattacctgccgctgtttttt
gaaaacgagctggaaacgctgtttgactatatcggcgaagacgcgctgtttgtctctttg
ggcgatgttcacgccgaggcaaaccgcttttggagcgacgtcaaatcgcgttacgccatg
gcgcagggcgacgaaacctatccgcctttgcttccacagcatttgtatctctcctcagat
gtttttgcaggccgtctgaaaaattatggtcaggtattgccggatatttttggtgttgaa
catacgttgccaaacgtggccgtcaaccgccaagcggatgaaccgttgcaggcattgaaa
gattttcagacggcctttaaaggacggattttgttgtgcgccgaaagtttgggacgacgc
gaaaccatgctcggtttcttgcagcaaaacggtttgaaagccaaacccgtgtccgactgg
cagggctttttatcggcacacgagccgctgatgattacagtggcgccgttggcatacggg
ttcaaactgggcggactgcaatcgccgaaccaacagcaaactacttccgcctccgaggga
gaaggcgatgcggttaccgaccaaaccgaattttccgcagccgcaacaaaccctctccct
agccctctcccacaggagagggaacaaagtgcagccgccgtttcaaccgaaagcagcctg
ccccccggtaaaagtaatctgcacgggcaaatccaacagcaacctgccccctcccccgtg
ggggagggttggggagagggcaaagcagttgccgctcaaaccgaatttcccgcatccgca
acaaaccctctccctaaccctctcccgcaggagagggaacaaagtgcagccgtcgtttca
gacagtctgaaagcagccgccgtttcaaccgaaagcagcctgccccccggtaaaagtaat
ctgcacgggcaaatccaacagcaacctgccccctcccccgtgggggagggttggggagag
ggcaaagcagttgccgctcaaaccgaattttccgcatccgcaacaaaccctctccctagc
cctctccctcaggagagggaacaaagtgcagccgtcgtttcagacagtctgaaagcagcc
gccgtttcaaccgaaagcagcctgccccccggtaaaagtaatctgcacgggcaaatccaa
cagcaacctgccccctcccccgtgggggagggttggggagagggcaaagcagttgccgct
caaagtgccatcgccgtcatcaccgaatccgatctctaccaatacgtcgcccgttcgcgc
gtccacaaccgccgcaagaaacacgccgccgtttcagacggtctgttgcgcgaccttgcc
gaaatcaacatcggcgaccccgtcgttcacgaagaacacggcatcgggcggtatatgggc
ttggtaacgatggacttgggcggcgaaaccaacgaaatgatgttgctcgaatacgcagga
gaagcgcagctttatgtgcctgtttcacaactgcatttaatcagccgctactccggtcag
gcgcatgaaaacattgccctgcacaagctcggcagtggcgcgtggaacaaggcgaagcgc
aaagccgccgaaaaggcgcgcgataccgccgccgagttgcttaacctttacgcccgacgc
gctgcccaatcgggacacaagtttgaaatcaacgagttggattatcaggcgtttgctgac
ggcttcggctacgaggaaaccgaagaccaggccgccgccatcgccgccgtgattaaagat
ttgacgcaagcgaagccgatggatcgccttgtgtgcggcgatgtcggcttcggcaaaacc
gaagttgccctgcgcgccgcgtttgtggcggtgatgggcggcaaacaggtcgccgtactc
gccccgaccacgcttctggtcgagcagcacgcgcaaaactttgccgaccgtttcgccgat
ttccctgtgaaagtcgccagcctttcgcgtttcaacaacagcaaagccactaaagccgcg
ctggaaggcatggcggacggcacggtcgacatcgttatcggcacgcacaaactggtgcag
gacgacatcaaattcaaaaacttaggtttagtgattatcgacgaagaacaccgcttcggt
gtgcgccaaaaagagcagctcaaacgcctgcgtgccaatgtcgacatcctcaccatgacc
gccacgccgattccgcgtactttaagtatggcgttggaaggactgcgcgacttctcgctg
attaccaccgcgcccagccgccgcctcgccgtcaaaacctttgtcaaaccctttagcgaa
ggcagcgtgcgcgaagccgtgttgcgcgaactcaaacgcggaggacaggtatttttcctg
cacaatgaagtagatacgattgaaaatatgcgcgagcggctggaaaccctgctgcccgaa
gcccgcatcggcgtggcgcacggacaactgcgcgagcgcgagctggaacaagtcatgcgc
gactttttacagcaacgattcaacgtgttgctctgttccaccatcatcgaaaccggtatc
gacattcccaacgccaacaccatcatcatcaaccgcgccgacaaattcggactggcgcaa
ctgcaccagcttcgcgggcgcgtcggacgcagccaccaccaagcctacgcctacctgctc
acgcccgaatacatcaccaaagacgcagaaaaacgcctcgacgccatcgcggcagcagac
gaactcggcgcaggtttcaccctcgccatgcaggatttggaaatccgcggcgcaggcgaa
atcctcggcgaagggcagtccggcgaaatgatacaggtcggcttcacgctctacaccgaa
atgctcaaacaagccgtgcgcgatctcaaaaaaggccgccaacccgacctcgacgcgccg
ctgggcatcaccaccgaaatcaaactgcacagccccgccctactgcccgaaagctactgc
cccgacatccacgagcgtctcgtcctctacaaacgcctcgccgtctgcgaaaccgtgcag
caaatcaacgccatacacgaagaactcgtcgaccgcttcggcctgcccgaacaacccgtc
aaaacccttatcgaaagccaccacctgcggcttatggcaaaagaattgggtatcgatgcc
attgatgcggccggcgaagcggtaacggtaaccttcggtaaaaacaataatgtcgatcca
accgaaatcatcctgctgattcagaacgacaaaaaataccgccttgccggcgccgataag
ctgcggtttaccgcagagatggaaaatatcgaggtcagaatcaacaccgtaaaaaacgtt
ttaaaaaccttgcaaaacagatgcctgcccaaataa
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