Natronomonas moolapensis: Nmlp_3875
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Entry
Nmlp_3875 CDS
T02478
Symbol
rad3b
Name
(GenBank) DNA repair helicase Rad3
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
nmo
Natronomonas moolapensis
Pathway
nmo03022
Basal transcription factors
nmo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nmo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Nmlp_3875 (rad3b)
09124 Replication and repair
03420 Nucleotide excision repair
Nmlp_3875 (rad3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nmo03021
]
Nmlp_3875 (rad3b)
03036 Chromosome and associated proteins [BR:
nmo03036
]
Nmlp_3875 (rad3b)
03400 DNA repair and recombination proteins [BR:
nmo03400
]
Nmlp_3875 (rad3b)
Enzymes [BR:
nmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Nmlp_3875 (rad3b)
Transcription machinery [BR:
nmo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Nmlp_3875 (rad3b)
Chromosome and associated proteins [BR:
nmo03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
Nmlp_3875 (rad3b)
DNA repair and recombination proteins [BR:
nmo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Nmlp_3875 (rad3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
HBB
AAA_34
ATPase
Motif
Other DBs
NCBI-ProteinID:
CCQ37987
UniProt:
M1XTW6
LinkDB
All DBs
Position
2840816..2842984
Genome browser
AA seq
722 aa
AA seq
DB search
MSESDDHRRYFPYEEPYDHQRDAMGRIREALVEERDVLFEGACGTGKTLASLVPALEYAA
AAGKTVLITTNVHQQTRQFIEEARAIAETEPIRAVVFRGKASMCHIDVGYEECQALRDTT
RELVDKERDIAELEEREGELLEASRGGNGAAADARGTVLSELEDLETGAEAIREEETICE
RYYNNLTADTDAFYGWLYEDVRTPEEIYEYAHGRDLCGYELLKEGMEGVDLVVCNYHHLL
DPTIREQFFRWVGRDPEDIVAVFDEAHNVADSARDHATRTLAERTIEGALDELEGVEDAR
AEPAANVVGAFREALVETYEDSFGFGERESIGEEWTDVAIDNETGRDDLSVGFLRNYTGQ
GFGADLEAALALGEELDRRYERAYKEGETTTRKECPTLTAAGFIERWMESSVEPGQYPVA
GVRRAETGVVGRAELYTCLPRQVTEPLFEELHATILMSATLRPFDVTEDVLGLDDPLTMA
YGEQFPESRRRTYAVETPALFASKRDDPAVQREVGDVVEDTIRFTPGNTLAFFPSYAEAE
RYYHRFAGESTPFLDEPGTRAEELRREFVAADDAVLFTSLWGTLAEGVSFDDDDARSVIV
VGVPYPHLDDRMEAVERAYEGAFGDGDGEAGWRYAVEIPTVRKTRQALGRVVRSPEDFGV
RVLVDERYTGSRRSELGEYSVYPSFPPEERSEHIDIEPGKLKFALLNFYADMDAWEGSPP
EP
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggaatcggacgaccaccgtcggtacttcccatacgaggagccctacgaccaccag
agagacgcgatggggcggatccgggaggcgctcgtcgaggagcgggacgtgctcttcgag
ggggcctgcgggaccgggaagacgctcgcttccctggtgccggccctcgaatacgcggcg
gcggcgggcaagacagtcctcatcaccaccaacgtccaccagcagaccagacagttcatc
gaggaggcccgcgcgatcgccgaaacggagccgatcagagccgtcgtcttccgcgggaag
gcatcgatgtgtcatatcgacgtgggctacgaggagtgtcaggcgctccgggacacgacc
cgcgagctggtggacaaagagcgcgacatcgccgaactcgaggagcgcgagggggaactc
ctcgaggcgagccgcgggggaaacggggcggctgccgacgcccgcgggacggtgctctcg
gagctggaggatctggagaccggggccgaagccatccgcgaggaggagaccatctgcgag
cgctactacaacaatctcaccgccgacaccgacgcgttctacgggtggctctacgaggac
gtccggacgcccgaggagatctacgagtacgcccacggccgggacctctgtgggtacgag
ttgctgaaggagggaatggagggcgtcgacctcgtcgtctgtaactaccaccacctcctc
gatccgacgatccgcgagcagttcttccgctgggtcggccgcgaccccgaggacatcgtc
gccgtcttcgacgaggcccacaacgtcgcggattcggcccgcgatcacgcgacgcggacg
ctcgccgagcggaccatagagggcgcgctcgacgagctcgaaggggtcgaggacgcccgg
gcggagccggcggcgaacgtcgtcggggcgtttcgggaggcgctcgtcgagacctacgag
gactccttcgggttcggggagcgcgaatcgatcggcgaggagtggaccgacgtggcgatc
gacaacgaaaccgggcgcgacgacctctcggtcggcttcctgcggaactacaccggacag
gggttcggggccgacctggaggcggcgctcgcgctcggggaggaactcgacaggcgttac
gagcgagcctacaaggagggcgagacgacgacccgcaaggagtgtccgacgctgaccgcg
gcgggcttcatcgagcgctggatggaatcgagcgtcgagcccgggcagtacccggtcgcg
ggcgtccggcgggccgagaccggcgtcgtcggacgggccgaactgtacacgtgcctgccg
agacaggtcaccgagccgctgttcgaggagctgcacgcgacgattctgatgagcgcgacg
cttcggcccttcgacgtcaccgaggacgtgttgggtctcgatgacccgctcacgatggcc
tacggcgagcagttccccgagtcgcggcgacgcacctacgccgtcgagacgcccgcactc
ttcgcgagcaagcgcgacgatcccgcggtccagcgcgaggtcggcgacgtcgtcgaggac
acgattcgattcactccggggaacacgctcgccttctttccgagttacgccgaggccgaa
cggtactaccaccgcttcgccggcgaatcgacccccttcctcgacgagccggggacgcgc
gccgaggagctccgtcgggagttcgtcgcggccgacgacgccgtgttgttcacctcgctt
tgggggacgctcgcggagggcgtcagcttcgatgacgacgacgcccggagcgtgatcgtc
gtcggggtgccgtatccccacctcgacgaccgaatggaggccgtcgagcgcgcctacgag
ggggccttcggcgacggcgacggggaggcagggtggcgctacgccgtcgagataccgacc
gtccgaaagacccggcaggcgctcggccgcgtcgtgcgctcgcccgaggacttcggcgtc
cgcgtgctggtcgacgagcgctacaccggatcgaggcgctcggagctgggcgagtacagc
gtctacccgagtttcccgccggaggagcgaagcgagcacatcgacatcgagccgggaaag
ctgaagttcgcgctgttgaacttctacgccgatatggacgcctgggaggggtcgccgccg
gagccatga
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