Neisseria meningitidis M04-240196 (serogroup B): NMBM04240196_0920
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Entry
NMBM04240196_0920 CDS
T01948
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nmq
Neisseria meningitidis M04-240196 (serogroup B)
Pathway
nmq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nmq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NMBM04240196_0920 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nmq03400
]
NMBM04240196_0920 (mfd)
Enzymes [BR:
nmq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NMBM04240196_0920 (mfd)
DNA repair and recombination proteins [BR:
nmq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NMBM04240196_0920 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
ERCC3_RAD25_C
UB2H
HemY_N
AAA_30
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
ADZ01396
LinkDB
All DBs
Position
complement(1021965..1025855)
Genome browser
AA seq
1296 aa
AA seq
DB search
MTYPIPKPREKSRWPNLSQGSLPLALARYLPHKQLKVVLTLDAEQALRLQTAWRFFRPHD
TAVFLPDWETLPYERFSPHQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAG
RTFWLKTGQTLDIGRLKSDLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSEMPYRIDLF
DDEIDSIKTFDTETQRTISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDGNPNDAAVY
KAVSNGHFGAGVEYYLPLFFENELETLFDYIGEDALFVSLGDVHAEANRFWSDVKSRYAM
AQGDETYPPLLPQYLYLSADVFAGRLKNYGQVLPDVSGKEHTLPDLAVNRQSDEPLQALK
DFQTTFDGRILLCAESLGRRETMLGFLQQNGLKAKPVSDWQGFLSAHEPLMITVAPLAYG
FKLGGLQSPNQQQTTSASEGEGDAVTDQTEFSAAATNPLPSPLPQEREQSAAAVSDDLKA
KSSLHLVASNLHGQIRQQPTPSPVGEGWGEGKAVAAQTEFPASATNPLPSPLPQEREQSA
AAVSDNLKTESSLPPGKSNLHGQIQQQPAPSPVGEGWGESKAVADQSAIAVITESELYQY
VARSRAHNRRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLVTMDLGDETNEMML
LEYAGEAQLYVPVSQLHLISRYSGQAHENVALHKLGSGAWNKAKRKAAEKARDTAAELLN
LYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQTKPMDRLVCGDV
GFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSK
ATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVD
ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSVREAVLRELKRGG
QVFFLHNEVDTIENMRERLETLLPEARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTI
IETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDA
IAAADELGAGFTLAMQDLEIRGAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDLKKGRQP
DLDAPLGITTEIKLHSPALLPEDYCPDIHERLVLYKRLAVCETVQQINTIHEELVDRFGL
PEQPVKTLIESHHLRLMAKELGIDAIDAAGEAVTVTFGKNNNVDPTEIILLIQNDKKYRL
AGADKLRFTAEMENIEVRINTVKNVLKTLQNRCLPK
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgacctaccccatccccaaaccccgtgaaaaatcccgttggcccaatctttcgcaaggc
tcgctgcccttggctttggcgcgttatctgccgcataagcagctcaaagtcgtgctgact
ctagatgcggaacaggcgctacgccttcagacggcatggcggtttttccgtccgcacgat
acggcggtgttcctgccggactgggaaacgctgccttacgagcgtttttcgccgcatcag
gatttggtgtcggaacggctgtcggcgttgtggcagattaagagcggcgcggcggatgtg
ttgtttgtgccggttgccacggcgatgcagaagctgccgcctgtgccgtttctggcaggg
cgcacgttttggctgaaaacagggcagactttggatataggccgtctgaaaagcgatttg
gtggatgcaggttataaccatgtttcccacgttgttgcggcaggcgagttcgctgtgcgc
ggcggtattgtcgatttgttcccgatgggcagcgaaatgccgtaccgcatcgatttgttc
gacgatgaaatcgacagcattaaaacctttgacaccgaaacgcaacgcaccatttccccc
gtttccgaaatccgcctgctgccggcacacgagttccccaccgacagcgaggcgcaaaag
attttccgcagccgcttccgagaagaagtcgacggtaatccgaacgatgcggctgtgtac
aaagccgtcagcaacggtcatttcggcgcgggcgtggaatactacctgccgctgtttttt
gaaaacgagttggaaacgctgtttgactatatcggcgaagatgcgctgtttgtctcttta
ggcgatgttcatgccgaggcaaaccgtttttggagcgatgtcaaatcgcgttacgcgatg
gcgcagggcgacgaaacctatccgcctttgcttccacagtatttgtatctctctgccgat
gtgttcgcaggccgtctgaaaaactacggacaggtgctgcccgatgtttccggcaaggaa
cacaccctgcctgaccttgccgtcaaccgccaatccgacgagccgttgcaggcattgaag
gattttcagacgacctttgacgggcggattctgctgtgcgccgaaagcttgggacggcgc
gaaaccatgctcggtttcttgcagcaaaacggtttgaaagccaaacctgtgtccgactgg
cagggcttcttgtcggcgcatgagccgctgatgattacggtcgcgccgttggcatacggg
ttcaaactgggcggactgcaatcgccgaaccaacagcaaactacttccgcctccgaggga
gaaggcgatgcggttaccgaccaaaccgaattttccgcagccgcaacaaaccctctccct
agccctctcccgcaggagagggaacaaagtgccgccgccgtttcagacgacctgaaagcc
aaaagcagcctgcatctcgtcgcaagtaatctgcacgggcaaatccgacagcaacctact
ccctcccccgtgggggagggttggggagagggcaaagcagttgccgctcaaaccgaattt
cccgcatccgcaacaaaccctctccctagccctctcccacaggagagggaacaaagtgcc
gccgccgtttcagacaacctgaaaaccgaaagcagcctgccccccggtaaaagtaatctg
cacgggcaaatccaacagcaacctgccccctcccccgtgggggagggttggggagaaagc
aaagcggttgccgaccaaagtgccatcgccgtcatcaccgaatccgagctctaccaatac
gtcgcccgttcgcgcgcccacaaccgccgcaagaaacacgccgccgtttcagacggtctg
ttgcgcgaccttgccgaaatcaatatcggcgaccccgttgtgcacgaagaacacggcatc
gggcggtatatgggcttggtcacaatggatttgggcgatgaaaccaacgaaatgatgttg
ctcgaatacgcgggcgaagcgcagctttatgtgcctgtttcgcaactgcatttaatcagc
cgctactccggtcaggcgcatgaaaacgtcgccctgcacaagctcggcagcggcgcgtgg
aacaaggcgaagcgtaaagccgccgaaaaggcgcgcgacaccgccgccgaattgctcaac
ctctacgcccaacgcgccgcccaatcgggacacaagtttgaaatcaacgagttggattat
caggcgtttgccgacggcttcggctacgaggaaaccgaagaccaggcagccgccatcgcc
gccgtgattaaagacctgacacagacgaagccgatggaccgactcgtgtgcggcgatgtc
ggtttcggcaaaacggaagtcgccctgcgcgctgcgtttgtggcggtgatgggtggcaaa
caggtcgccgtactcgccccgaccacgcttctggtcgagcagcacgcgcaaaacttcgcc
gaccgtttcgccgatttccccgtaaaagtcgccagcctttcgcgtttcaacaacagcaaa
gccaccaaagccgcgctggaaggcatggcggacggcacggtcgatatcgttatcggcacg
cacaaattggtgcaggacgacatcaaattcaaaaacttaggtttagtgattatcgatgaa
gaacaccgattcggcgtgcgccagaaagagcagctcaaacgcctgcgcgccaatgtcgac
atcctcaccatgaccgccacaccgattccgcgcaccctcagcatggcgctcgaaggtctg
cgcgacttctcgctgattactaccgcgccgagccgccgcctcgccgtcaaaacctttgtc
aaacccttcagcgaaggcagcgtgcgcgaagccgtattgcgtgaactcaaacgcggcgga
caagtgtttttcctgcacaatgaagtggatacgattgagaatatgcgcgagcggctggaa
accctgctgcccgaagcccgcatcggcgtggcgcacggacaactgcgcgagcgcgagctg
gaacaagtcatgcgcgactttttgcagcaacgatttaacgtgttgctctgttccaccatc
atcgaaaccggtatcgatatccccaacgccaacaccatcatcatcaaccgcgccgacaaa
ttcggactggcgcaactgcaccagcttcgcgggcgcgtcggccgcagccatcaccaagcc
tacgcctacctgctcacgcccgaatacatcactaaagacgcagaaaaacgcctcgatgcc
attgcggcggcagacgaactcggcgcaggttttaccctagccatgcaggatttggaaatc
cgtggtgcaggcgaaatccttggcgaaggacaatccggcgaaatgatacaggtcggcttc
acgctctacaccgaaatgctcaaacaagccgttcgcgacctcaaaaaaggccgccagccc
gacctcgacgcaccgttgggcatcaccaccgaaatcaaactgcacagccccgccctgctg
cccgaagattactgccccgacatccacgaacggctcgtcctctacaaacgcctcgccgtc
tgcgaaaccgtgcaacaaatcaacaccatacacgaagaactcgtcgaccgcttcggcctg
cccgaacaacccgtcaaaacccttatcgaaagccaccacttacggcttatggcaaaagaa
ttgggtatcgatgccattgatgcggccggcgaagcggtaacggtaacctttggtaaaaac
aataatgtcgatccaaccgaaatcatcctgctgattcagaacgacaaaaaataccgcctt
gccggcgccgataagctgcggtttaccgcagagatggaaaatatcgaggtcagaatcaac
accgtaaaaaacgttttaaaaaccttgcaaaacagatgcctgcccaaataa
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