Neisseria meningitidis M04-240196 (serogroup B): NMBM04240196_1000
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Entry
NMBM04240196_1000 CDS
T01948
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
nmq
Neisseria meningitidis M04-240196 (serogroup B)
Pathway
nmq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NMBM04240196_1000 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmq03019
]
NMBM04240196_1000 (rnr)
03016 Transfer RNA biogenesis [BR:
nmq03016
]
NMBM04240196_1000 (rnr)
Enzymes [BR:
nmq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NMBM04240196_1000 (rnr)
Messenger RNA biogenesis [BR:
nmq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NMBM04240196_1000 (rnr)
Transfer RNA biogenesis [BR:
nmq03016
]
Prokaryotic type
tRNA degradation factors
NMBM04240196_1000 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ADZ01472
LinkDB
All DBs
Position
complement(1118030..1120405)
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AA seq
791 aa
AA seq
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MNKNIKSLNLREKDPFLSREKQRYEHPLPSREWIIELLERKGVPSKIESLARELSITEDE
YVFFERRLKAMARDGQVLINRRGAVCAADKLDLVKCRVEAHKDGFGFAVPLTPAKDGDFV
LYERQMRGIMHGDIVTVRPAGMDRRGRREGTVLDIVERAQSKVVGRFYMDRGVAILEPED
KRLNQSIVLEPDGVARFKPESGQVIVGEIEVYPEQNRPAVAKIIEVLGDYADSGMEIEIA
VRKHHLPHQFSEACAKAAKKIPDHVRKSDLKGRVDLRDLPLVTIDGETARDFDDAVFAEK
IGRNYRLVVAIADVSHYVRPDDAIDTDAQERSTSVYFPRRVIPMLPENLSNGICSLNPNV
ERLCMVCDMVITYAGNIKEYRFYPAVMRSHARLTYNQVWKWLSDGIGHPFKAQIDTLYKL
FKILQKKRFERGAVEFDSIETQMLFDDNGKIEKIVPVVRNDAHKLIEECMLAANVCAADF
LLKNKHTALFRNHLGPTPEKLAALREQLGLLGLQLGGGDNPSPKDYAALAGQFKGRPDAE
LLQVMMLRSMQQAVYEPHCDGHFGLAYEAYAHFTSPIRRYPDLTVHRAIKAVLNQQTYTP
KKSWQALGVHTSFCERRADDASRDVENWLKTYYMRDKVGEVFEGKISGMTSFGIFVTLDG
IHIDGLVHISDLGEDYFNFRPEIMAIEGERSGIRFNMGDRVAVRVARADLDDGKIDFVLI
AEGSGRGRKVKSSASAKPAGTAGKGKPKTAAEKKTARGGKVRGRGASAAAESGKKAKKPV
PIKVKKRKGKS
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaatattaaatctttaaatttacgggaaaaagacccgtttttaagtcgtgaa
aaacagcgttatgaacatcctttgcccagtcgggaatggataatcgaattgttggagcgc
aaaggtgtgccttcaaaaatcgaatcgcttgcgcgcgagctgtcgattacggaagacgag
tatgtcttttttgaacgccgtctgaaggcgatggcgcgggacggtcaggttttaatcaac
cgtcggggcgcggtttgcgcggcggacaaattggatttggtcaaatgccgtgtcgaggcg
cacaaagacggcttcggtttcgccgtgccgctcacgcccgccaaagacggtgattttgtt
ttgtacgaacgccagatgcgcggcattatgcacggcgatattgtcactgttcgtcctgcc
ggcatggaccgtaggggccgccgcgaagggacggttctggatattgtcgaacgcgcgcaa
agcaaagttgtcggccgtttctatatggataggggcgtggcgattttggagccggaagac
aagcgtctgaaccaaagcatcgtattggaaccggacggcgtggcgcgtttcaaacctgaa
tccggtcaggtcatcgtcggcgaaattgaggtttatcctgagcaaaaccggccggcagtg
gcaaaaatcatcgaagttttgggcgattatgccgacagcggcatggagattgaaattgcc
gtgcgcaagcatcatttgccgcaccaattcagtgaagcgtgtgccaaagccgcgaaaaaa
attcccgaccatgtacgcaaaagcgatttgaaaggccgcgtcgatttgcgcgatttgcct
ttggtaacgatagacggcgaaacggcgcgcgattttgacgatgccgtgtttgccgaaaaa
atcggacgcaattaccgtctggtcgtggcgattgccgatgtcagccattatgtccgcccc
gatgacgctatcgacacggacgctcaggaacgcagcaccagtgtttacttcccgcgccgc
gtgattcccatgttgccggaaaacctgtccaacggcatctgctcgctcaatcctaatgtc
gagcgtttgtgtatggtgtgcgatatggtcatcacttacgcgggcaatattaaagaatac
cgcttctaccccgccgtgatgcgctctcatgcccgcctgacctacaaccaagtttggaaa
tggctttcagacggcatcgggcatccgttcaaagcacaaatcgacacgctttacaaactc
ttcaaaatccttcagaaaaagcgtttcgaacgcggggcggtggagtttgacagcatcgaa
acccaaatgcttttcgacgacaacggtaaaattgaaaaaatcgtccccgttgtccgcaac
gatgcccacaagctgattgaagaatgtatgttggcggcaaacgtttgcgcagcggatttt
ctgttgaaaaacaagcataccgcattgttccgcaaccatttggggcccacgcccgaaaaa
ctcgccgccttgcgcgagcagctcggtctgttggggcttcaacttggcggcggcgacaac
ccgtcgccgaaagactatgccgcgcttgccggacagttcaaaggcaggccggatgccgaa
ttgctgcaagtcatgatgttgcgctccatgcaacaggcggtttacgaaccgcattgcgac
ggacactttggtcttgcctacgaagcatacgcccacttcacctcgcccatccgccgctat
cccgacctgaccgtacaccgcgccatcaaagccgtgttgaatcagcaaacctacacgcca
aaaaaaagctggcaggctttgggcgtgcatacctcgttctgtgagcgccgtgccgacgac
gccagccgcgacgtggaaaactggctgaaaacctattatatgcgcgataaggtcggcgaa
gtattcgaaggtaaaatctccggcatgaccagttttggtatctttgtaacactggacggc
atccacattgacggcttggtgcatatcagcgatttgggcgaagactatttcaacttccgc
cccgaaatcatggcaatcgaaggcgaacgcagcggcatccgtttcaacatgggggacagg
gttgccgtccgggtcgcccgtgccgatttggatgatggaaaaatcgattttgtcctgatt
gccgaggggagcggcagggggcggaaagttaaatcatccgcgtctgccaaaccggcaggg
acggcggggaaagggaaaccgaaaaccgccgccgagaaaaaaacagcccgaggcggcaaa
gtaaggggaaggggcgcgtctgccgccgcagaatcggggaaaaaggcaaagaaaccggtt
ccgattaaggtaaaaaaacggaaaggcaaatcataa
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