Nitrosopumilus maritimus: Nmar_0431
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Entry
Nmar_0431 CDS
T00626
Name
(GenBank) KH type 1 domain protein
KO
K03679
exosome complex component RRP4
Organism
nmr
Nitrosopumilus maritimus
Pathway
nmr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Nmar_0431
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmr03019
]
Nmar_0431
Messenger RNA biogenesis [BR:
nmr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Nmar_0431
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Nmar_0431
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_1
KH_6
RRP4_S1
RRP40_S1
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
KH_KRR1_2nd
Motif
Other DBs
NCBI-ProteinID:
ABX12327
UniProt:
A9A5C8
LinkDB
All DBs
Position
384228..384908
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AA seq
226 aa
AA seq
DB search
MADKRKYVIPGDVVTTGPFRPEQNTVLEGNKIISTTIGISEIYDDSVRVIPLTGKYIPKI
NDLVIGKVNSHTSLSWELDINSCYVGFLPAQDVFGRDFSAHADELATKLRTGDLVAARIA
NFDRTRDPLVSISDRDLGKIDSGVLMEISPSKVPRLIGKKGSMIQMIEEATDAAVTIGQN
GWVVVSCESPEGLLKAKKAIQMVNEQAHVANLTDQVKEMLDKKGES
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atggcagataagagaaaatacgttatcccaggtgatgttgtaaccacaggacctttcaga
cctgaacaaaacacagtacttgaaggaaataaaataatctcaacaacaattggtatttct
gaaatttatgatgactctgttcgtgtaattccactaactggaaaatatattccaaaaatt
aatgatcttgtaattggcaaagtcaactcccacacatccttgtcttgggaattggatatc
aattcatgctatgttggatttttgccagcacaagatgtttttggacgtgacttttctgct
catgctgatgaacttgcaaccaaactccgaacaggagatctagttgctgcaagaattgca
aactttgatagaacaagagatccattagtctccatctctgatagagacttgggaaagatt
gattctggcgttcttatggaaatatctccaagcaaagttccacgcctaattggaaagaaa
ggtagtatgattcagatgattgaagaggctactgatgctgcagtaacaattggacaaaac
ggttgggttgtagtttcctgtgaatccccagagggattattaaaggctaaaaaagcaatt
caaatggttaatgagcaagcacacgttgcaaatttgactgatcaagtgaaagaaatgtta
gataaaaaaggtgaatcataa
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