Nitrosopumilus maritimus: Nmar_0433
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Entry
Nmar_0433 CDS
T00626
Name
(GenBank) 3' exoribonuclease
KO
K12589
exosome complex component RRP42
Organism
nmr
Nitrosopumilus maritimus
Pathway
nmr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Nmar_0433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmr03019
]
Nmar_0433
Messenger RNA biogenesis [BR:
nmr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Nmar_0433
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
Nmar_0433
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
ABX12329
UniProt:
A9A5D0
LinkDB
All DBs
Position
385645..386463
Genome browser
AA seq
272 aa
AA seq
DB search
MTSHTVIDELKRNQILELLEQGKRVDGRALDESREVSIETNAIPKANGSARVRLGDTEVV
CGVKIQPDRPFPDTGDKGLFICTAELLPLSHPTVETGPPGPEVIELARVVDRGIRESHMI
DVSQLVIEKDKSVIGVFADNVVVDYDGNLFDACSYAATAALLSSKSPKWNWVDDAPALVE
GEEVDVPITTIPVSVTMGKIGNHIIVDPNGDEWASMDARITITSDSDGNICALQKGGDDG
FTQDEIVQCGEISVRVGAKIREKLKAAQQGGQ
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgacatcacatacagttattgacgaactaaagagaaaccaaattcttgaattattagaa
caaggaaaaagagtagatggtagagctcttgatgaatcaagagaagtttctattgaaact
aatgccattccaaaagcaaacggttctgcaagagttcgattaggcgatactgaagttgta
tgtggcgttaaaatccaaccagacagaccttttccagacactggtgacaaaggacttttc
atttgtactgctgaactattaccactttcacatcctacagttgaaacaggacctccggga
cctgaagtaattgaactagctagagttgttgatagaggaatcagagaaagtcacatgatt
gatgtatctcaattagttattgaaaaagacaaatctgtaattggtgtctttgcagacaat
gttgttgttgattatgatggtaatctatttgatgcatgttcttatgctgcaactgccgca
ttactctcatcaaaaagtcctaaatggaattgggtagacgacgcacctgcactagttgaa
ggtgaagaagttgatgttccaatcactacaattcctgtatctgtaaccatgggaaagatt
ggaaatcacatcatagttgatcctaatggtgatgaatgggcaagtatggatgcaagaatt
acaattactagtgattctgatggaaacatctgtgccttacaaaaaggtggagatgatggg
ttcacacaagatgaaatcgttcaatgcggtgaaatctcagtcagagtaggcgcaaaaata
agagaaaaattaaaagcagctcagcaaggaggtcagtaa
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