Nitrosopumilus maritimus: Nmar_1340
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Entry
Nmar_1340 CDS
T00626
Name
(GenBank) Transcription factor TFIIB cyclin-related
KO
K03124
transcription initiation factor TFIIB
Organism
nmr
Nitrosopumilus maritimus
Pathway
nmr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
nmr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Nmar_1340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nmr03021
]
Nmar_1340
Transcription machinery [BR:
nmr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
Nmar_1340
Prokaryotic type
Archaeal type
TFB
Nmar_1340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Sigma70_r4
Cyclin_N
Ribosomal_S27e
HTH_3
Zn_ribbon_3
Lar_restr_allev
Zn_ribbon_LysW
HTH_AsnC-type
A2L_zn_ribbon
Trm112p
RB_B
DZR
YacG
RPA_interact_C
HTH_11
DUF7567
Zn_ribbon_tTFIIB
Zn_ribbon_Com
Motif
Other DBs
NCBI-ProteinID:
ABX13236
UniProt:
A9A2J7
LinkDB
All DBs
Position
complement(1227903..1228823)
Genome browser
AA seq
306 aa
AA seq
DB search
MSSGRFFDHIMSSQEIKCPRCGKNALVTDVESSEIFCSNCGIVVEEKTNDRRPERAFANS
TTDKSHTGDKTSLTRHDRGLSTVINPFDKDSAGSPLSASMKSSMTRLRKWDNRSRIKTND
DRNLQQALLELSKMKEKLSLSDAIAEKASYIYRKALEKKLVKGRSIASLVAACLYAACRE
SEAPRTLREVAASIGIKRKEISATYRLIFKELDLKMPVIDSVSCIAKIASNAELSEKTKR
YAIKILKKAEKQNMSAGKHPMGLAASALYLASIDLEEFRTQKEIADAAGITEVTVRNRCK
GLKQMI
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgggaaggttttttgatcatatcatgagttcacaagaaatcaaatgtcctaga
tgtggaaaaaacgcgctagtcactgatgttgaatcgtcagaaatattttgttcaaattgc
ggtattgtggttgaagagaaaactaatgaccgcagacccgaaagagcatttgcaaattca
actaccgataaatcccatactggcgacaagacatctttgacaagacatgacaggggactt
agcactgtgattaacccctttgacaaagattctgctggaagtcccttgtctgcgtcaatg
aaatcatccatgacacgactccggaaatgggataatcgaagtcgcataaagaccaatgat
gacagaaatttgcaacaagcactgctggaattgtcaaaaatgaaagaaaaattgtccttg
tctgacgcaattgctgaaaaagcatcgtacatctatagaaaggcactggagaaaaaactg
gtcaaggggcgttctattgcatctcttgttgcagcttgtctttatgccgcatgccgtgaa
tcagaagctcccaggacactccgagaagttgcagcatccataggaattaaacgcaaagaa
atctctgcaacataccggctcatattcaaagagttagaccttaaaatgcccgtaattgac
tctgtctcctgtattgcaaaaattgcaagcaatgcagaactgtctgagaaaacaaaaaga
tatgccataaaaattctaaaaaaggcagaaaaacaaaacatgtctgcagggaagcatcct
atgggactggctgcctctgcattatacctggcgtcaatagatttggaggaatttaggact
caaaaagaaattgcagatgcagcgggaatcacagaggttactgtcagaaacagatgcaaa
ggtctcaaacaaatgatctaa
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