Nitrosopumilus maritimus: Nmar_1453
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Entry
Nmar_1453 CDS
T00626
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nmr
Nitrosopumilus maritimus
Brite
KEGG Orthology (KO) [BR:
nmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nmr03016
]
Nmar_1453
Enzymes [BR:
nmr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Nmar_1453
Transfer RNA biogenesis [BR:
nmr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Nmar_1453
Prokaryotic type
tRNA splicing ligases
Nmar_1453
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Complex1_LYR
DUF3492
Motif
Other DBs
NCBI-ProteinID:
ABX13349
UniProt:
A9A3T7
LinkDB
All DBs
Position
complement(1321778..1323226)
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AA seq
482 aa
AA seq
DB search
MGDITPKKIGENQYQIDADSNLGMKVPVKIYANQGLLDKMLTDRTIMQARNVSSIPGIVG
HSVVLPDGHEGYGFPVGGVAAMDAEEGMISPGGVGYDINCGVRLLRSNLTEEVVRSKLKD
LVTDLFSSIPSGVGSKGAVKLSHSELDEVLVNGVNWAIDHGYGSTNDSDVCEENGQIKNA
DPNKVSDKARKRGAPQLGSLGSGNHFLEIQKVAEVHDEEAAEKMGIKEGTITVLVHCGSR
GFGHQVCSDYLRVSEQAMSKYDITLPDRELACVPNTSEEGESYRKAMFAALNFAWSNRQM
ITHWTRKSFERVFNQSESDLDMKLVYDVAHNIAKVEKHKVNGEERKLVVHRKGATRAFPA
NRDEVPTKYRHLGQPVLVPGSMGTASWILLGQPNSMDLSFGSTAHGAGRTMSRSKARRNY
TEDDVKKSLNDKGIFIKALTRDGVVEETPQAYKDVNSVVDVSHNLGIATKVAKLVPIGVI
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgggtgacattactccaaagaaaattggtgagaatcaataccaaattgatgctgattct
aatttaggaatgaaagttccagtaaagatttacgcaaatcaaggattacttgacaaaatg
cttacagatagaactatcatgcaagcaagaaatgtctcatctattcctggaatcgtagga
cacagtgtagttttacctgatggacatgaagggtatggttttccagtaggtggagttgct
gctatggatgctgaagaaggaatgatcagtcctggtggtgtcggttatgacattaactgt
ggagtgagattgctccgctctaatctaactgaagaagtagttcgctcaaaactaaaggac
ttggtaactgatttgtttagttcaattccttcaggagttggctctaaaggtgcagtaaaa
cttagtcactcagaactagacgaggttctagttaatggtgtaaactgggcaattgatcat
ggttatggttctacaaatgattcagatgtttgtgaagagaatggtcagataaaaaatgca
gaccctaacaaagtttcagataaagcaagaaagagaggagctccacaacttggaagttta
ggctctggaaatcactttttagaaattcaaaaggttgcagaagttcatgatgaagaagca
gctgaaaagatgggaatcaaagaaggaacaattacagttctagttcattgtggttcaaga
ggatttggtcaccaagtttgtagtgattatttgagagtatcagaacaagcaatgtcaaag
tatgacatcactctaccagacagagaacttgcatgtgttccaaatacttctgaagaagga
gagtcttacagaaaagcaatgtttgcagctttaaactttgcatggagtaacagacagatg
atcactcattggacaagaaaatcttttgaacgcgtattcaaccaatctgaatctgatctt
gacatgaaactagtgtacgacgttgcacacaatatagctaaagttgaaaaacacaaagta
aacggagaagaaagaaaactagttgtccacagaaaaggtgcaactagagcatttcctgca
aacagagatgaggttccaacaaaatatcgtcatttggggcaacccgtattggttccaggt
tcaatgggtactgcaagctggatacttttaggacaaccaaattctatggacttgagcttt
ggttctactgcacatggtgcaggaagaacaatgtcacgttccaaagcaagacgaaattac
actgaagatgatgttaaaaaatccctaaatgacaagggcatatttatcaaggcattaacc
cgagatggagttgtggaagagacacctcaagcctacaaggacgttaattctgtagttgat
gtatctcacaatctaggaattgccaccaaagtagcaaaattggtgcctataggtgtgatt
aaaggttga
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