Nitrosopumilus maritimus: Nmar_1566
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Entry
Nmar_1566 CDS
T00626
Name
(GenBank) RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)-like protein
KO
K07573
exosome complex component CSL4
Organism
nmr
Nitrosopumilus maritimus
Pathway
nmr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Nmar_1566
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmr03019
]
Nmar_1566
Messenger RNA biogenesis [BR:
nmr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Nmar_1566
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Nmar_1566
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Gene cluster
GFIT
Motif
Pfam:
ECR1_N
Prok-RING_1
S1_RRP4
EXOSC1
Motif
Other DBs
NCBI-ProteinID:
ABX13462
UniProt:
A9A5Y4
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All DBs
Position
1434547..1435098
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AA seq
183 aa
AA seq
DB search
MSENATYPGEKIASIEEYEAGYNAFDDGDMVRAATIGQKDIDKTTRTANINHPKNLSIPK
VGDVVIGTVAAVMSSMIAVSIDYINGNPTTSKVECVCSTRNIRKRNIALVNDIAKLKILN
HLNGTIHATIDESSLGILFTKCRKCGGKVVPMRDAIKCTECSWIDERKLSADFGKSDFVK
LRE
NT seq
552 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaatgcaacatatccaggtgaaaaaatagcatctattgaagaatatgaggca
ggatacaatgcttttgatgatggagatatggtcagagcagcaactattggccaaaaagac
atcgataaaaccaccagaactgcaaatatcaatcatccaaagaatctatccataccaaaa
gtaggagatgttgtaattggaacagttgcagcagtaatgtcatctatgattgcagtttca
attgattacattaatggaaatccaactacatctaaagttgaatgtgtatgttctacaaga
aacattagaaaaagaaatatcgcactagtaaacgatatagcaaaattaaaaattttaaat
catcttaatggtacgattcatgcaacaatagatgagtcaagtttagggatactatttaca
aaatgtcgcaaatgtggtggaaaagtagtacctatgcgtgatgctataaaatgtacagag
tgttcatggattgatgaaagaaaactatctgcagactttggtaaaagcgatttcgtaaaa
ctgagagaataa
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