Neisseria meningitidis M01-240355 (serogroup B): NMBM01240355_1127
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Entry
NMBM01240355_1127 CDS
T01947
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
nms
Neisseria meningitidis M01-240355 (serogroup B)
Pathway
nms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NMBM01240355_1127 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nms03019
]
NMBM01240355_1127 (rnr)
03016 Transfer RNA biogenesis [BR:
nms03016
]
NMBM01240355_1127 (rnr)
Enzymes [BR:
nms01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NMBM01240355_1127 (rnr)
Messenger RNA biogenesis [BR:
nms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NMBM01240355_1127 (rnr)
Transfer RNA biogenesis [BR:
nms03016
]
Prokaryotic type
tRNA degradation factors
NMBM01240355_1127 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ADY99646
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All DBs
Position
1170312..1172696
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AA seq
794 aa
AA seq
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MNKNIKSLNLREKDPFLSREKQRYEHPLPSREWIIELLERKGVPSKIESLARELSITEDE
YVFFERRLKAMARDGQVLINRRGAVCAADKLDLVKCRVEAHKDGFGFAVPLTPAKDGDFV
LYERQMRGIMHGDIVTVRPAGMDRRGRREGTVLDIVERAQSKVVGRFYMDRGVAILEPED
KRLNQSIVLEPDGVARFKPESGQVIVGEIEVYPEQNRPAVAKIIEVLGDYADSGMEIEIA
VRKHHLPHQFSEACAKAVKKIPDHVRKSDLKGRVDLRDLPLVTIDGETARDFDDAVFAEK
IGRNYRLVVAIADVSHYVRPDDAIDTDAQERSTSVYFPRRVIPMLPENLSNGICSLNPNV
ERLCMVCDMVITYAGNIKEYRFYPAVMRSHARLTYNQVWKWLSGGIGHPFKAQIDTLYKL
FKILQKKRFERGAVEFDSIETQMLFDDNGKIEKIVPVVRNDAHKLIEECMLAANVCAADF
LLKNKHTALFRNHLGPTPEKLAALREQFGLLGLQLGGGDNPSPKDYAALAGQFKGRPDAE
LLQVMMLRSMQQAVYEPHCDGHFGLAYEAYAHFTSPIRRYPDLTVHRAIKAVLNQQTYTP
KKSWQALGVHTSFCERRADDASRDVENWLKTYYMRDKVGEIFEGKISGVANFGIFVTLDD
IHIDGLVHISDLGEDYFNFRPEIMAIEGERSGIRFNMGDRVAIKVARADLDDGKIDFVLI
AEGSGRGRKVKSSASAKPAGTAGKGKPKTAAGKKTARGGKVRGRGASAAAESGKKAKKPI
PIEVQKVKKRKGKS
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaatattaaatctttaaatttacgggaaaaagacccgtttttaagtcgtgaa
aaacagcgttatgaacatcctttgcccagtcgggaatggataatcgaattgttggagcgc
aaaggtgtgccttcaaaaatcgaatcgcttgcgcgcgagctgtcgattacggaagacgag
tatgtctttttcgaacgccgtctgaaggcgatggcgcgggacggtcaggttttaatcaac
cgccggggcgcggtttgcgcggcggacaaattggatttggtcaaatgccgtgtcgaggcg
cacaaagacggtttcggttttgccgtgccgctcacgcccgccaaagacggtgattttgtt
ttgtatgaacgccagatgcgcggcattatgcacggcgatattgtcactgttcgtcctgcc
ggcatggaccgtaggggccgccgcgaagggacagttctggatattgtcgaacgcgcgcaa
agcaaagtggtcggccgtttctatatggataggggcgtggcgattttggagccggaagac
aagcgtctgaaccaaagcatcgtattggaaccggacggcgtggcgcgtttcaaacctgaa
tccggtcaggtcatcgtcggcgaaattgaggtttatcctgagcaaaaccggccggcagtg
gcaaaaatcatcgaagttttgggcgattatgccgacagcggcatggagattgaaattgcc
gtgcgcaagcatcatttgccgcaccaattcagtgaagcgtgtgccaaagccgtgaaaaaa
attcccgaccatgtacgcaaaagcgatttgaaaggccgcgtcgatttgcgcgacctgcct
ttggtaacgattgacggcgaaacggctcgagattttgacgatgcggtgtttgccgaaaaa
atcggacgcaattaccgtctggtcgtggcgattgccgatgtcagccattatgtccgcccc
gatgacgctatcgacacggacgctcaggaacgcagcaccagtgtttacttcccgcgccgc
gtgattcccatgttgccggaaaacctgtccaacggcatctgctcgctcaatcctaatgtc
gagcgtttgtgtatggtgtgcgatatggttatcacttacgcgggcaatattaaagaatac
cgcttctaccccgccgtgatgcgctctcatgcccgcctgacctacaaccaagtttggaaa
tggctttcaggcggcatcgggcatccgttcaaagcccaaatcgacacgctttacaaactc
ttcaaaatccttcagaaaaagcgtttcgaacgcggggcggtggagtttgacagcatcgaa
acccaaatgcttttcgacgacaacggtaaaattgaaaaaatcgtccccgttgtccgcaac
gatgcccacaagctgattgaagaatgtatgttggcggcaaacgtttgcgcagcggatttt
ctgttgaaaaacaagcataccgcattgttccgcaaccatttggggcccacgcccgaaaaa
ctcgccgccttgcgcgagcagttcggtctgttggggcttcaacttggcggcggcgacaac
ccgtcgccgaaagactatgccgcgcttgccggacagttcaaaggcaggccggatgccgaa
ttgctgcaagtcatgatgttgcgctccatgcaacaggcggtttacgaaccgcattgcgac
ggacactttggtcttgcctacgaagcatacgcccacttcacctcgcccatccgccgctat
cccgacctgaccgtacaccgcgccatcaaagccgtgttgaatcagcaaacctacacgcca
aaaaaaagctggcaggctttgggcgtgcatacctcgttctgtgagcgccgtgccgacgac
gccagccgcgacgtggaaaactggctgaaaacctactatatgcgtgacaaagtcggcgaa
atatttgaaggcaaaatttccggggtggcaaattttggaatatttgtcactttggacgat
atccatatcgacggtctggtgcatatcagcgatttgggcgaagactatttcaacttccgc
cccgaaatcatggcaatcgaaggtgaacgcagtggcatccgtttcaatatgggcgacagg
gttgccattaaagtggcccgtgccgatttggatgatggaaaaatcgattttgtcctgatt
gccgaggggagcggcagagggcggaaagttaaatcatccgcgtctgccaaaccggcaggg
acggcggggaaagggaagccgaaaaccgccgccgggaaaaaaacagcccgaggcggcaaa
gtaaggggaaggggcgcgtctgccgccgcagaatcggggaaaaaggcaaagaaaccgatt
ccgattgaagtacaaaaggtaaaaaaacggaaaggcaaatcataa
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