Neisseria meningitidis M01-240355 (serogroup B): NMBM01240355_1223
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Entry
NMBM01240355_1223 CDS
T01947
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nms
Neisseria meningitidis M01-240355 (serogroup B)
Pathway
nms03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NMBM01240355_1223 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nms03400
]
NMBM01240355_1223 (mfd)
Enzymes [BR:
nms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NMBM01240355_1223 (mfd)
DNA repair and recombination proteins [BR:
nms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NMBM01240355_1223 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
ERCC3_RAD25_C
UB2H
AAA_30
HemY_N
Motif
Other DBs
NCBI-ProteinID:
ADY99738
LinkDB
All DBs
Position
1279974..1284098
Genome browser
AA seq
1374 aa
AA seq
DB search
MTYPIPKPREKSRWSNLSQGSLPLALARYLPHKRLKVVLTQDAEQALRLQTAWRFFRPHD
TAVFLPDWETLPYERFSPHQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAG
RTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSEMPYRIDLF
DDEIDSIKTFDTDTQRTISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDGNPNDAAVY
KAVSNGHFGAGVEYYLPLFFENELETLFDYIGEDALFVSLGDVHAEANRFWSDVKSRYAM
AQGDETYPPLLPQHLYLSADVFAGRLKNYGQVLPDVSGKEHTLPDLAVNRQSDEPLQALK
DFQTTFDGRILLCAESLGRRETMLGFLQQNGLKAKPVSDWQGFLSAHEPLMITVAPLAYG
FKLGGLQSPNQQQTTSASEGEGDAVTDQTEFSASATNPLPSPLPQEREQSAAAVSDSLKA
AAVSTESSLPLGTSNLHGQIRQQPAPSPVGEGWGEGWGEGKAVAAQTEFPASATNPLPSP
LPQEREQSAAAVSDDLKTKSSLHPVANNLHGQIRQQPTPSPVGEGWGEGKAVAAQTEFSA
AATNPLPSPLPQEREQSAAVVSDNLKTESSLPPGKSNLHGQIQQQPAPSPVGEGWGESKA
VADQSAIAVITESELYQYVARSRAHNRRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGR
YMGLVTMDLGGETNEMMLLEYSGEAQLYVPVSQLHLISRYSGQAHENVALHKLGSGAWNK
AKRKAAEKARDTAAELLNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAV
IKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADR
FADFPVKVASLSRFNNSKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEH
RFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKP
FSEGSVREAVLRELKRGGQVFFLHNEVDTIENMRGRLETLLPEARIGVAHGQLRERELEQ
VMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYA
YLLTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSGEMMQVGFTL
YTEMLKQAVRDLKKGRQPDLDAPLGITTEIKLHSPALLPESYCPDIHERLVLYKRLAVCE
TVQQINAIHEELVDRFGLPEQPVKTLIESHHLRLMAKELGIDAIDAAGEAVTVTFGKNNN
VDPTEIILLIQNDKKYRLAGADKLRFTAEMENIEVRINTVKNVLKTLQNRCLPK
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atgacctaccccatccccaaaccccgtgaaaaatcccgttggtccaatctttcgcaaggc
tcgctgcccttggctttggcgcgttatctgccgcacaagcggctcaaggtcgtgctgacc
caagatgcggaacaggcgctacgccttcagacggcatggcggtttttccgtccgcacgac
acggcggtgttcctgccggactgggaaacgctgccttacgagcgtttttcgccgcatcag
gatttggtgtcggaacggctgtcggcgttgtggcagattaagagcggcgcggcggacgtg
ttgttcgtgccggttgccacggcgatgcagaagctgccgcccgtgccgtttctggcaggg
cgcacgttttggctgaaaacagggcagactttggatataggccgtctgaaaaccgatttg
gtagatgcgggctacaaccatgtttcccatgttgttgcggcgggcgagtttgccgtgcgc
ggcggcattgtcgatttgttccccatgggcagcgaaatgccctatcgcatcgatttgttt
gacgatgaaatcgacagcatcaaaacctttgatacggacacgcagcgcaccatctccccc
gtttccgaaatccgcctgctgccggcgcacgagttccccaccgacagcgaagcgcaaaaa
atcttccgcagccgcttccgagaagaagtcgacggtaatccgaacgatgcggctgtgtac
aaagccgtcagcaacggccacttcggcgcgggcgtggaatattatctgccgctgtttttt
gaaaatgagctggaaacgctgtttgactatatcggcgaagacgcgctgtttgtctctttg
ggcgatgttcacgccgaggcaaaccgcttttggagcgatgtcaaatcccgttacgcgatg
gcgcagggcgacgaaacctatccgcctttgcttccacagcatttgtatctctctgctgat
gtttttgcaggccgtctgaaaaactacggacaagtgctgcccgatgtttccggcaaggaa
cacaccctgcccgaccttgccgtcaaccgccaatccgacgagccgttgcaggcattgaag
gattttcagacgacctttgacgggcggattttgctgtgcgccgaaagcttgggacggcgc
gaaaccatgctcggtttcttgcagcaaaacggtttgaaagccaaacctgtgtccgactgg
cagggcttcttgtcggcgcatgagccgctgatgattacagttgcgccgttggcttacgga
ttcaaactgggcggattgcaatccccgaaccagcagcaaactacttccgcctccgaagga
gaaggcgatgcggttaccgaccaaaccgaattttccgcatccgcaacaaaccctctccct
agccctctcccacaggagagggaacaaagtgcagccgccgtttcagacagtctgaaagca
gccgccgtttcaaccgaaagcagcctgcccctcggtacaagtaatctgcacgggcaaatc
cgacagcaacctgccccttcccccgtgggggagggttggggggagggttggggagagggc
aaagcagttgccgctcaaaccgaatttcccgcatccgcaacaaaccctctccctagccct
ctcccacaggagagggaacaaagtgcagccgccgtttcagacgacctgaaaaccaaaagc
agcctgcatcccgtcgcaaataatctgcacgggcaaatccgacagcaacctactccctcc
cccgtgggggagggttggggagagggcaaagcagttgccgctcaaaccgaattttccgca
gccgcaacaaaccctctccctagccctctcccacaggagagggaacaaagtgcagccgtc
gtttcagacaacctgaaaaccgaaagcagcctgccccccggtaaaagtaatctgcacggg
caaatccaacagcaacctgccccctcccccgtgggggagggttggggagaaagcaaagcg
gttgccgaccaaagtgccatcgccgtcatcaccgaatccgagctctaccaatacgtcgcc
cgttcgcgcgcccacaaccgccgcaagaaacacgccgccgtttcagacggtctgttgcgc
gaccttgccgaaatcaatatcggcgatcccgtcgtgcacgaagaacacggcatcgggcgg
tatatgggcttggtcacaatggatttgggcggcgaaaccaacgaaatgatgttgctcgaa
tactcgggcgaagcgcagctttatgtgcctgtttcgcaactgcatttaatcagccgctac
tccggtcaggcgcatgagaacgtcgccttgcacaagctcggcagcggcgcgtggaacaag
gcgaagcgcaaagccgccgaaaaagcgcgcgacaccgccgccgaattgctcaacctctac
gcccaacgcgccgcccaatcgggacacaagtttgaaatcaacgagttggactatcaggcg
tttgccgacggcttcggctacgaggaaaccgaagaccaggccgccgccatcgccgccgtg
attaaagatttgacgcaagcgaagccgatggatcgccttgtgtgcggcgatgtcggcttc
ggcaaaaccgaagtcgccctgcgcgccgcgtttgtggcggtgatgggcggcaaacaggtc
gccgtacttgctccgaccactcttttggtcgagcagcacgcgcaaaacttcgccgaccgt
ttcgccgatttccccgtgaaagtcgccagcctttcgcgtttcaacaacagcaaagccacc
aaagccgcgctggaaggcatggcagacggcacggtcgatattgttatcggtacgcacaaa
ctggtgcaggacgacatcaaattcaaaaacttaggtttagtgattatcgacgaagaacac
cgcttcggcgtgcgtcagaaagagcagctcaaacgcctgcgcgccaatgttgatatcctt
accatgaccgccacgccgattccgcgtactttaagtatggcgttggaaggactgcgcgac
ttctcgctgattaccaccgcgcccagccgccgcctcgccgtcaaaacctttgtcaaaccc
tttagcgaaggcagtgtgcgcgaagccgttttacgcgaactcaaacgcggcggacaagtg
tttttcctgcacaatgaagtggatacgattgaaaatatgcgcgggcggctggaaaccctg
ctgcccgaagcccgcatcggcgtggcgcacggacaactgcgcgagcgcgagctggaacaa
gtcatgcgcgactttttgcagcaacgatttaacgtgttgctctgttccaccatcatcgaa
accggcatcgacattcccaacgccaacaccatcatcatcaaccgtgccgacaaattcgga
ttggcgcagctgcaccagcttcgcgggcgcgtcggacgcagccaccaccaagcctacgcc
tacctgctcacgcccgaatacatcactaaagacgcagaaaaacgcctcgatgccattgcg
gcggcagacgaactcggcgcaggtttcaccctcgccatgcaggatttggaaatccgcggc
gcaggcgaaatcctcggcgaagggcagtccggcgaaatgatgcaggtcggcttcacgctc
tacaccgaaatgctcaaacaggccgtgcgcgacctcaaaaaaggccgccaacccgacctc
gacgcgccgctgggcatcaccaccgaaatcaaactgcacagccccgccctactgcccgaa
agctactgccccgacatccacgagcgtctcgtcctctacaaacgcctcgccgtctgcgaa
accgtgcagcaaatcaacgccatacacgaagaactcgtcgaccgcttcggcctgcccgaa
caacccgtcaaaacccttatcgaaagccaccacttacggcttatggcaaaagaattgggt
atcgatgccattgatgcggccggcgaagcggtaacggtaaccttcggtaaaaacaataat
gtcgatccaaccgaaatcatcctgctgattcagaacgacaaaaaataccgccttgccggc
gccgataagctgcggtttaccgcagagatggaaaatatcgaggtcagaatcaacaccgta
aaaaacgttttaaaaaccttgcaaaacagatgcctgcccaaataa
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