Neisseria meningitidis 8013 (serogroup C): NMV_1115
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Entry
NMV_1115 CDS
T01928
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor (TRCF)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nmt
Neisseria meningitidis 8013 (serogroup C)
Pathway
nmt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nmt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NMV_1115 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nmt03400
]
NMV_1115 (mfd)
Enzymes [BR:
nmt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NMV_1115 (mfd)
DNA repair and recombination proteins [BR:
nmt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NMV_1115 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
ERCC3_RAD25_C
UB2H
AAA_30
HemY_N
Motif
Other DBs
NCBI-ProteinID:
CAX49980
UniProt:
A0A9K2KNT2
LinkDB
All DBs
Position
complement(1122571..1126710)
Genome browser
AA seq
1379 aa
AA seq
DB search
MTYPIPKPREKSRWLNLSQGSLPLALARYLPHRRLKVVLTQDAEQALRLQTAWRFFRPYD
TAVFLPDWETLPYERFSPHQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAG
RTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSEMPYRIDLF
DDEIDSIKTFDTDTQRTISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDGNPNDAAVY
KAVSNGHFGAGVEYYLPLFFENELETLFDYIGEDALFVSLGDVHAEANRFWSDVKSRYAM
AQGDETYPPLLPQHLYLSTDVFAGRLKNYGQVLPDVSGKEHALPDLAVNRQSEEPLQALK
DFQTAFEGRILLCAESLGRRETMLGFLQQNGLKAKPVSDWQGFLSAHEPLMITVAPLAYG
FKLGGLQSPNQQQTTSASEGEGDAVTDQTEFSAAATNPLPSPLPQEREQSAAAVSDSLKA
AAVSTESSLPPGKSNLHGQIQQQPTPSPVGEGWGEGKAVAAQTEFSAAAISPLPSPLPSP
LPQEREQSAAAVSDGLKTESSLYSIANNLHGQIRQQPTPSPVGEDWGESKTVAAQTEFSA
AATNPLPSPLPQEREQSAAAVSDSLKAAAVSTESSLPPGKSNLHGQIQQQPAPSPVGEGW
GEGKAVAAQSAIAVITESDLYQYVARSRIHNRRKKHAAVSDGLLRDLAEINIGDPVVHEE
HGIGRYMGLITMDLGGETNEMMLLEYAGEAQLYVPVSQLHLISRYSGQAHENVALHKLGS
GAWNKAKRKAAEKARDTAAELLNLYARRAAQSGHKFEINESDYQAFADGFGYEETEDQAA
AIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQ
NFADRFADFPVKVASLSRFNNSKATKAALEGMADGTVDIVIGTHKLVQDNIKFKNLGLVI
IDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVK
TFVKPFSEGSVREAVLRELKRGGQVFFLHNEVDTIENMRGRLETLLPEARIGVAHGQLRE
RELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSH
HQAYAYLLTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSGEMIQ
VGFTLYTEMLKQAVRDLKKGRQPDLDAPLGITTEIKLHSPALLPESYCPDIHERLVLYKR
LAVCETVQQINAIHEELVDRFGLPEQPVKTLIESHHLRLMAKELGIDAIDAAGESVTVTF
GKNHNIDPSEIILLIQNDKKYRLAGADKLRFTAEMENIEVRINTVKNVLKTLQNRCLPK
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atgacctaccccatccccaaaccccgtgaaaaatcccgttggctcaatctgtctcaaggc
tcgctgcccttggctttggcgcgttatctgccgcataggcggctcaaagtcgtgctgacc
caagatgcggaacaggcactacgccttcagacggcgtggcggtttttccgtccgtatgat
acggcggtgttcctgccggactgggaaacgctgccttacgagcgtttttcgccgcatcag
gatttggtgtcggagcgtttgtcggcgttgtggcagattaaaagcggcgcggcggacgtg
ttgttcgtgccggttgccacggcgatgcagaagctgccgcccgtgccgtttttggcgggg
cgcacgttttggctgaaaacaggacagactttggatataggccgtctgaaaaccgatttg
gtagatgcgggctacaaccatgtttcccatgttgttgcggcgggcgagtttgccgtgcgc
ggcggcattgtcgatttgttccccatgggcagcgaaatgccctaccgcatcgatttgttc
gacgatgaaatcgacagcatcaaaacctttgatacggacacgcagcgcaccatttctcct
gtgtctgaaatccgcctgctgccggcacacgagttccccaccgacagcgaagcgcaaaaa
atcttccgcagccgcttccgagaagaagtcgacggtaatccgaacgatgcggctgtgtac
aaagccgtcagcaacggccacttcggcgcgggcgtggaatattatctgccgctgtttttt
gaaaatgagctggaaacgctgtttgactatatcggcgaagacgcgctgtttgtctctttg
ggcgatgttcacgccgaggcaaaccgcttttggagcgacgttaaatcacgttacgccatg
gcgcagggcgacgaaacctatccgcctttgcttccacagcatttgtatctctctaccgat
gtattcgcaggccgtctgaaaaactacggacaagttctgcccgatgtttccggcaaggaa
cacgccctgcccgaccttgccgtcaaccgccaatccgaagagccgttgcaggcattgaag
gattttcagacggcatttgaaggacggattctgctgtgcgccgaaagtttgggacggcgc
gaaaccatgctcggtttcttgcagcaaaacggtttgaaagccaaacctgtgtccgactgg
cagggcttcttgtcggcgcatgagccgctgatgattacagttgcgccgttggcatacggg
ttcaaactgggcggactgcaatcgccgaaccaacagcaaactacttccgcctccgaggga
gaaggcgatgcggttaccgaccaaaccgaattttccgcagccgcaacaaaccctctccct
agccctctcccgcaggagagggaacaaagtgccgccgccgtttcagacagtctgaaagca
gccgccgtttcaaccgaaagcagcctgccccccggtaaaagtaatctgcacgggcaaatc
caacagcaacctactccctcccccgtgggggagggttggggagagggcaaagcagttgcc
gctcaaactgaattttccgcagccgcaataagccctctccctagccctctccctagccct
ctcccacaggagagggaacaaagtgccgccgccgtttcagacggcctgaaaaccgaaagc
agcctgtattccatcgcaaataatctgcacggacaaatccgacagcaacctaccccctcc
cccgtgggggaagattggggagagagcaaaacagttgccgctcaaaccgaattttccgca
gccgcaacaaaccctctccctagccctctcccacaggagagggaacaaagtgcagccgcc
gtttcagacagtctgaaagcagccgccgtttcaaccgaaagcagcctgccccccggtaaa
agtaatctgcacgggcaaatccaacagcaacctgccccctcccccgtgggggagggttgg
ggagagggcaaagcagttgccgctcaaagtgccatcgccgtcatcaccgaatccgatctc
taccaatacgtcgcccgttcgcgcatccacaaccgccgcaagaaacacgccgccgtttca
gacgggctgttgcgcgaccttgccgaaatcaatatcggcgaccccgtcgtgcacgaagaa
cacggcatcgggcggtatatgggcttgatcacaatggatttgggcggcgaaaccaacgaa
atgatgttgctcgaatacgcaggcgaagcgcagctttatgtgcctgtttcgcaactgcat
ttaatcagccgctactccggccaggcgcatgaaaatgtcgccctgcacaagctcggcagc
ggcgcgtggaacaaggcaaaacgcaaagccgccgaaaaagcgcgcgataccgccgccgag
ttgctcaacctctacgcccgacgcgccgcccaatcgggacacaagtttgaaatcaacgag
tcggactatcaggcgtttgccgacggcttcggctacgaggaaaccgaagaccaggccgcc
gccatcgccgccgtgattaaagatttgacgcaggcgaagccgatggaccgcctcgtgtgc
ggcgatgtcggtttcggcaaaaccgaagtcgccctgcgcgccgcgtttgtagcggtgatg
ggcggcaaacaggtcgccgtactcgccccgaccacgcttctggtcgagcagcacgcgcaa
aacttcgccgaccgcttcgccgatttccccgtgaaagtcgccagcctttcgcgtttcaac
aacagcaaagccactaaagccgcgctggaaggcatggcggacggcacggtcgacatcgtt
atcggcacgcacaaactggtgcaggacaacatcaaattcaaaaacttaggtttagtgatt
atcgacgaagaacaccgcttcggtgtgcgccaaaaagagcagctcaaacgcctgcgtgcc
aatgtcgatatccttaccatgaccgccacgccgattccgcgtactttaagtatggcgttg
gaaggtctgcgcgacttctcgctgattaccactgcaccgagccgccgcctcgccgtcaaa
acctttgtcaaacccttcagcgaaggcagtgtgcgcgaagccgttttacgcgaactcaaa
cgcggcggacaggtatttttcctgcacaatgaagtggatacgattgaaaatatgcgcggg
cggctggaaaccctgctgcccgaagcccgcatcggcgtagcgcacggacaactgcgcgag
cgcgagctggagcaagtcatgcgcgactttttgcagcaaagattcaacgtattgctctgt
tccaccattattgaaaccggcatcgacatccccaacgccaacaccatcatcatcaaccgc
gccgacaaattcggactggcgcaactgcaccagcttcgcgggcgcgtcggccgcagccac
caccaagcctacgcctacctgctcacgcccgaatacatcaccaaagatgcagaaaaacgc
ctcgacgccatcgcggcggcagacgaactcggcgcaggtttcaccctcgccatgcaggat
ttggaaatccgcggcgcaggcgaaatcctcggcgaagggcagtccggcgaaatgatacag
gtcggcttcacgctttacaccgaaatgctcaaacaagccgtgcgcgacctcaaaaaaggc
cgccagcccgaccttgacgcaccgctgggcatcaccaccgaaatcaaactgcacagcccc
gccctgctgcccgaaagctactgccccgacatccacgagcgtctcgtcctctacaaacgc
ctcgccgtctgcgaaaccgtacagcaaatcaatgccatacacgaagaactcgtcgaccgc
ttcggactgcccgagcaacccgtcaaaacccttatcgaaagccaccacttacggcttatg
gcaaaagaattgggtatcgatgccattgatgcggccggcgaatcggtaacggtaaccttc
ggcaaaaaccacaatatcgatccaagcgaaatcatcctgctgattcagaacgacaaaaaa
taccgccttgccggcgcggataagctgcggtttactgcagagatggaaaatatcgaggtc
agaatcaacaccgtaaaaaacgttttaaaaaccttgcaaaacagatgcctgcccaaataa
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