Nitrosospira multiformis: Nmul_A1064
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Entry
Nmul_A1064 CDS
T00302
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nmu
Nitrosospira multiformis
Pathway
nmu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Nmul_A1064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmu03019
]
Nmul_A1064
03009 Ribosome biogenesis [BR:
nmu03009
]
Nmul_A1064
Enzymes [BR:
nmu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Nmul_A1064
Messenger RNA biogenesis [BR:
nmu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Nmul_A1064
Ribosome biogenesis [BR:
nmu03009
]
Prokaryotic type
rRNA processing factors
Nmul_A1064
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
CDK2AP
Motif
Other DBs
NCBI-ProteinID:
ABB74367
UniProt:
Q2YA54
LinkDB
All DBs
Position
complement(1229215..1232148)
Genome browser
AA seq
977 aa
AA seq
DB search
MKRMLFNATQPEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKAVITRLEPSLEAAFVEY
GGERHGFLPFKEISRSYLKESPDPGRVRVQDALHEGQELIVQVDKDERGTKGAALTTYIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRAELRDVMSHLNIPQGMSIIARTAGIGRTEEELQ
WDLNYLLQLWRAIEDASKGQSGAFLIYQESSLVIRAIRDYFNQEIGEILIDTESIYEQAC
QFMGHVMPGNVARVKLYRDDVPLFSRFQIEHQIETAYSRQVTLPSGGAIVIDHTEALVSV
DVNSARATRGSDIEQTALATNLEAADEIARQLRLRDLGGLVVIDFIDMEVSRNQREVENR
LHDALRYDRARVQMGKISRFGLLELSRQRLRPSLGESSYISCPRCHGTGHIRGTDSSALH
ILRIIQEEAMKENTAVLHAQVPVDVATYLLNEKRAEIHAIEARLKVSVVLIPNIHLETPN
YSITRLRHDDVKLGEVQTSYQMVEKPAQDIPLPSSGQEPKPMRQQAAVRGITPAQPAPVR
EQKPQHEPEPLSLLDKIFGWFKQGGVGEKTVRHEPPVAAAHPEERGQGRRDRREGRIGEN
EKAARAVQRPRDARAERGAEISPSGAPDLTREAVPQRQERSEAKTQGERAAAKKHPRSQR
EEKPRTELKPSSELPPATEEAVQPSEEGSRRRRRGGRQRDRSERLDRAAREARQAIAKDS
PLQQSAEQVAHEENPAADLISGAINGIPPLILASTPLEQKEASKESPAGAKNNTPSELLR
TDRTLPVIMPEAVSEASPEVVPQVAAMESTSAPAVTIAEKVALANEQQITPESPDRLPED
RREAATAAAVTVTGAPILIASEPLVEVEAARVVPEDIPSQIPLSALETAMPHTKIEQEEV
PAKEGHQAVPPQQPGATPSLDLGAAGLIMIETLPEKIRPAETEAEGEAMKAQPRRRRTPP
PPVIEQQEALVQVETHK
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctatttaatgcgacacagccggaggaattgcgtgtcgctattgtcgat
ggtcaaaagctcatcgatctcgacattgaatctgccggcaaggaacaacgcaagagcaat
atctacaaagctgttatcacccgtcttgaaccgagcctcgaagccgccttcgtcgagtac
gggggggagcggcatggttttctgccgttcaaggagatttcccgctcctatttgaaagag
agtccggaccctgggcgggtccgagtccaggacgcgcttcatgaaggccaggaactcatc
gtccaggtggacaaggacgaacggggaacaaaaggagccgcacttaccacctatatctcg
ctcgcgggccgttatctggtgctgatgcccaataatccgcgcgggggaggtgtctcgcgc
cgcatagaaggcgaagatcgcgccgaactgcgcgatgtcatgtcgcatttgaacattcct
cagggcatgagcatcattgcgcggacggcggggataggacgcaccgaagaagagttgcag
tgggacctcaactacctgctgcagttgtggcgtgctattgaagatgcttccaaaggccag
agcggtgctttccttatttaccaggaaagcagtctcgtcatcagggcaatccgggattac
ttcaatcaggaaatcggtgaaatcctgattgatacggaaagcatctatgagcaggcatgc
cagttcatgggtcatgtcatgcccggcaacgtagcgcgggtcaagctctatcgggatgac
gtgcccctgttttcccgctttcaaatcgagcaccagatcgaaaccgcatattcgcggcag
gttaccctcccctcgggcggcgcgatcgtgatcgaccatacggaagccctggtttcggtg
gacgtaaattcagcccgtgccacccgcggttccgacatcgagcagacggccctggctacc
aatctggaggcggcagatgaaattgcgcggcaactgcgcctgcgcgacctcggcggactt
gtggtcatcgactttatcgacatggaagtctcccgcaaccagcgggaggtggaaaaccgg
ttgcacgacgcgttgcgctacgatcgggcacgggtgcaaatgggcaagatttcccgcttc
ggtttgcttgaattatcgcgccagcgcctgcggccttccctgggggaaagcagctatatt
tcctgtccgcgctgccacggtaccggtcacatccggggtaccgattcctcggcgttgcat
atcctcagaatcattcaggaagaagcgatgaaggagaatacggcagtgctgcatgctcag
gtgccggtagatgtagcgacttatctgctgaacgaaaaacgggcggaaattcatgcaatc
gaagcacgcctgaaagtaagtgtcgttctgatccccaacatccatctcgaaacgcccaat
tacagcatcacccgcctgcgtcatgacgacgtaaaacttggtgaagttcagacgagttac
cagatggtggaaaaacccgcccaagatatccctctgccttccagcggacaggagcccaag
cctatgcggcagcaggcagcggtacgaggcatcacaccggcacaacctgctccggtacgc
gagcaaaaaccgcagcatgaaccggaaccgctttccctgctcgataaaatattcggctgg
tttaaacaggggggggtcggcgaaaagaccgttcggcacgaaccgcctgtcgctgctgca
catcctgaggaacggggtcagggacgtcgtgaccgccgggaaggacgcattggcgaaaat
gaaaaggcagcacgcgccgtccaacgtccacgcgatgcacgcgcggagcgaggggccgaa
atcagcccaagcggtgctccggacttgacgcgcgaagctgtgccgcagcgccaggaacgc
agcgaggcaaaaactcagggtgaaagagctgctgcaaaaaaacatccccggtcgcagcgt
gaagaaaagccgcggacggaactcaaaccctcttccgagctaccccctgccacggaagaa
gccgtacagccgagtgaggaaggcagccgccgcagacggcgtggtggcaggcaacgcgac
cggagcgagcgcctggatcgtgcagcgcgtgaagctaggcaggcaattgcaaaggattct
cctctccagcaatctgccgagcaggtagcgcacgaggaaaatcctgcggcagatctcatt
tcgggagccataaatggaataccgccacttatcttggcttctacccctctggagcaaaaa
gaggcatcaaaggaatcccctgcaggagcaaagaataataccccttccgaacttttgcgg
acagatagaactttgccggtaattatgcccgaagctgtatccgaagcttcgcccgaagtc
gtaccccaagtggctgcgatggaatctacctctgctccggcggtcacgatagccgaaaaa
gtggctctggcgaatgaacagcagattactcctgagtcacctgacagacttcctgaggat
cggagagaggcagcgaccgcagcagcagttaccgttaccggtgcgccgattttaattgcg
tcagagccgctggttgaagttgaagcagcaagagtcgttccggaggacatcccctcccag
attcccctgagcgccttggaaacggctatgccccatacaaaaatcgaacaggaagaagtt
cctgcaaaagaaggacaccaagcagtgcctcctcagcaaccaggggctacgccatctctc
gatttaggtgcggccggtctgatcatgatcgagacccttcccgaaaaaataagacctgct
gaaaccgaagcagaaggagaagcaatgaaagcacagcctcgacgtagaagaacgcctcct
cccccggtaatcgagcagcaggaagcgctggtacaggtggagacccataaataa
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