Nitrosospira multiformis: Nmul_A1393
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Entry
Nmul_A1393 CDS
T00302
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
nmu
Nitrosospira multiformis
Brite
KEGG Orthology (KO) [BR:
nmu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmu03019
]
Nmul_A1393
Enzymes [BR:
nmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Nmul_A1393
Messenger RNA biogenesis [BR:
nmu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Nmul_A1393
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_19
nSTAND3
AAA_22
nSTAND_NTPase5
T2SSE
TsaE
NACHT
PhoH
AAA_23
ABC_tran
Myosin_head
Sigma54_activat
Motif
Other DBs
NCBI-ProteinID:
ABB74696
UniProt:
Q2Y975
LinkDB
All DBs
Position
1585645..1589634
Genome browser
AA seq
1329 aa
AA seq
DB search
MKNSPIVNAKSRNFEQRLANLPKPAYPEELPVVALRQEIAQAIQKNQVVIISGETGSGKT
TQLPKICLELGWGLHAMIGHTQPRRIAARTVAARIASELKSPLGHAVGYKVRFSDKVSPE
TYVKLMTDGILLAETQGDPNLLAYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKLIV
TSATINSERFSAHFHNAPVIEVSGRMYPVEVRYRPIEAPARAASAIAEDRNEDKAGNKTR
DKDKDRQKDKHKDRDRDEGDIEQAILDAVDEINRCGPGDVLVFLPGEREIRDTAEALRKH
AFGGPGTGRAGAEILPLFARQSYADQERVFKPGGSSLRRIVLATNVAETSLTVPGIRYVI
DTGVARIKRYSYRNKVEQLQVEKISRASANQRAGRCGRVMSGICFRLYSEQDYLARPEFT
DPEILRSSLAAVILRMKSLKIGSIENFPFLEPPLPRMIADGYQLLAELGAVDESNTLTSI
GWRLARFPIDPRIARMILAAKEENCLTEMLIIASALSVQDPRDRPFERQEAADRAHQSFQ
DERSDFLGYLKLWDFFDDLLKHKKSNRKLIEQCQENFLSHRRMREWREVHGQLHTLVVET
GFKPNKIPANYDEIHRALLAGLLGNIGFRIDEDNEYLGTRGIKFSIFPGSVLKKAKPKWI
VAAELTETTRLYGRGVAKIDPAWVERIGGKFCKKHYFDPHWEKKSAQVSAFERVTLYGLT
VVPKRRVYYGNINPKEAREIFIRSALVAGEYITQAPFFKHNHELIANVAALEHKTRRPDV
LVDEQEIFVFYDGLIPEGISNGAAFEKWHREAERENSRLLYIPKEYLMRHTAQSVTEERF
PDTMLVDGFPLSLTYRFDPGHVLDGVTITVPLPLLNKLDATQFDSLVPGLVREKITWYLR
ALPKQIRRHVVPVPEFVTQFLESAEHAAATSPPEPSPSLLTETLARFIRTKTGLTVPPDA
WDEKPPSHLMMNYKIVDDAGQELAMNRDLGQLKTQLGQAAQLTFSRSESGEHNPLERDDV
KHWDFGDLPQEITFTRAGKNMTGFPALAERDGKVAIRLFDTREAAELSMRGGVRQLLGFE
LKEQMKQLEKDLSGQGAKSGKGRYLAQAAFQLHTLIKPEQLKEDILNAVADRAFIADDAL
PRSEKEFVAQRQRARTRLPAVSEALVRIVQNVASESQVLMARISSIGGTGKVGVQKTGAA
SGGGSGNPGADLMIQLRNLVYPGFLSATPWERLQHLPRYLKGMILRLDKYDANPERDARH
AAAIAGLWNRYEQRLEKHRKARIDDPRLVEFRWQIEELRISLFAQELKTPSPVSAKRLQK
LWEEINSTV
NT seq
3990 nt
NT seq
+upstream
nt +downstream
nt
atgaagaattctcctatcgttaacgccaagagcaggaattttgagcagcgcctggcaaac
ctgccgaagccggcttatccggaagagctcccggtagtagctctacggcaggagatcgcc
caggctattcagaaaaaccaggtagtgatcatcagcggcgagaccggttcgggcaagacc
acacaattgccgaaaatctgcctggaactcggatggggtctgcacgcgatgatcgggcat
acgcagcctcgtcgtatcgctgcacgaaccgtggcggcacgaatcgcttcagagctcaag
agtccgctggggcatgcggtaggatacaaggtgcgcttttcggacaaggtgagtccggaa
acgtatgtcaagctcatgacagacggcattctgctggcggagactcagggtgatccgaat
ttgcttgcctacgatacgatcatcatcgacgaggcgcacgaacgcagcctgaacatcgat
tttctgctcggatatctcaagcaactgctgccgcgccgaccggatctgaagctgatcgtt
acttccgccaccatcaattccgaacgattctccgcgcatttccataacgcgcctgtcatt
gaagtatccggccgcatgtacccggtggaggtacgttatcggcccatcgaggctccggct
cgcgctgcttccgccatcgcggaagatcggaatgaagacaaggccgggaacaagaccagg
gataaagataaggacaggcagaaggataaacataaggatagggacagggatgaaggtgac
atagagcaggccatccttgatgcagtggatgaaatcaatcgctgcgggccgggggatgtg
ttggtgttcctgccgggcgagcgggaaatccgcgataccgcggaggcgttgcgcaagcat
gcttttggtggacctggcacgggccgcgctggcgccgaaattctgccattgttcgcgcgc
cagtcctatgccgaccaggaacgggttttcaaacctgggggcagtagcttgcgacgtatc
gtgcttgccaccaacgtggcagaaacttcattgaccgttcccggcattcgctacgtaatc
gataccggcgtggcgcgcatcaagcgctacagctatcgcaacaaggtggaacagttgcag
gtggagaagatttcacgcgcctccgctaatcagcgcgcgggacgctgcggccgggtgatg
agcggtatctgtttccggctttattcggagcaggattatcttgcccgcccggaattcacc
gacccggaaatcctgcgctcttcgctggccgcggtgattttacgcatgaaatctctcaaa
attggatcaatcgagaatttccctttcctcgaaccgcccctgccccgcatgattgcggac
ggctatcagttactggctgaactcggcgcagtggatgagagtaacacccttaccagtatc
ggttggcggctggctaggtttcccatcgaccccaggattgcgcgcatgatcctggcagcg
aaggaggaaaactgcctgaccgagatgctcatcatcgcctctgccctgagcgtgcaggat
ccgcgagaccgtccgttcgagcggcaggaagccgctgaccgggcccaccagagcttccag
gacgagcgctccgattttctgggctatctgaagttgtgggatttctttgatgacctgctc
aagcataagaaatccaaccgcaagttgatcgagcaatgccaggaaaactttttgtcgcat
cgcagaatgcgggagtggcgtgaagtccacggtcaattgcatacgctggtagtggaaaca
ggatttaagcccaacaagataccggcgaactacgatgaaatacatcgggcgcttctcgcg
gggttgctcggcaatatcggcttcaggattgacgaggataacgaatacctcggaacgcgc
ggcatcaagttttcaattttcccgggttccgtgctgaaaaaggccaaacccaaatggatc
gtcgctgcagagctgacggaaaccacccggctttatggtcgaggtgtagcgaaaatcgat
cccgcctgggtggaaaggatcggtggaaagttttgcaagaagcattatttcgacccgcac
tgggagaagaaatcagcgcaggtatcggcattcgagcgggtaaccctgtatggattgaca
gtagtaccgaagcggcgcgtctactacggaaatatcaacccgaaagaagcacgggagatt
ttcatacgctcggccctcgtagcaggggaatacattacccaggccccattttttaagcac
aaccacgagcttatcgccaatgtggccgctctcgaacataaaacccgccggccggatgtg
ctggtagatgaacaggaaattttcgtgttctacgatgggctcatccccgagggaatcagc
aatggcgccgctttcgagaaatggcacagagaggccgagcgtgagaattcgcgcttgctc
tacattcccaaggaatacctgatgcgccatacggcgcagagcgtaacggaagaacggttt
cccgataccatgctcgtagacggcttccccctgtcactcacctatcgcttcgatcccgga
catgtgctggacggggtcaccattaccgtaccgttgccactgctgaacaagctggatgcc
acgcaattcgacagcctcgtcccggggctggtccgcgaaaagataacctggtatctgcgg
gcactccccaagcagatacgccgccacgttgtaccggtcccggagtttgtaacgcagttt
ctggaaagcgcggaacatgcagcagcaacttcaccccctgaaccctctccgtcacttctg
accgaaacattggctcgctttatccggaccaaaaccggccttaccgttccaccagatgcc
tgggacgaaaaaccgccttcgcatctgatgatgaactacaaaatcgtggatgatgcgggg
caagagctggcaatgaaccgggatctgggccaattgaaaacgcaactcgggcaagcggca
caactgacattctcccgttccgagtcgggagagcataatccccttgaacgcgacgatgta
aaacactgggatttcggtgatctgccgcaggaaatcaccttcacccgtgcgggcaagaac
atgaccggcttccctgctctcgccgaacgggatggaaaagtagcgattcgcctgttcgat
acgcgcgaagcggcagagctcagcatgcgaggcggagtgcgccaattgctgggcttcgag
ctgaaggagcaaatgaaacagctggaaaaagatctgtcaggacagggggcaaagagtgga
aagggcagatatctggcgcaggcggcctttcaactgcacacgctcatcaagcctgagcag
ctcaaggaagatatattgaatgcggtcgcagaccgcgcttttatcgcggatgatgcgctg
ccccgcagtgaaaaggaatttgtcgcccagcgccagcgtgcccgcacgcggctccctgct
gtgtctgaggctctggttcgcatcgtgcaaaacgttgccagtgagtcccaggtattgatg
gcgaggatttcttcaatcggaggaacgggcaaggttggcgtgcaaaaaaccggcgcagca
agtggcggtggttctggtaaccctggagccgacttgatgatccaactccgcaacctcgtt
tatccaggatttttgagcgccaccccttgggaacgcttgcagcatttaccgcgttacctg
aaaggcatgatcctccgcctggataagtatgacgccaatcccgagcgcgacgcgcgtcac
gctgctgccattgccggattgtggaaccggtatgagcagcgccttgaaaaacatcgcaag
gcgaggatcgatgatcccaggctcgttgaattccgctggcagatcgaggaactgcgtatt
tcgctgtttgcccaggaactgaaaacaccctcccctgtttcggccaaacggcttcagaaa
ttatgggaggaaatcaattcaacagtttga
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