Nitrospira moscoviensis: NITMOv2_1200
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Entry
NITMOv2_1200 CDS
T04041
Symbol
rpoC
Name
(GenBank) RNA polymerase, beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nmv
Nitrospira moscoviensis
Pathway
nmv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nmv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NITMOv2_1200 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nmv03021
]
NITMOv2_1200 (rpoC)
03400 DNA repair and recombination proteins [BR:
nmv03400
]
NITMOv2_1200 (rpoC)
Enzymes [BR:
nmv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NITMOv2_1200 (rpoC)
Transcription machinery [BR:
nmv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NITMOv2_1200 (rpoC)
DNA repair and recombination proteins [BR:
nmv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NITMOv2_1200 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ALA57628
UniProt:
A0A0K2G9J9
LinkDB
All DBs
Position
1137713..1141900
Genome browser
AA seq
1395 aa
AA seq
DB search
MEGVYTLFEKPRDSVSFDSMRIRIASPEKIRSWSYGEVKKPETINYRSFKPEKDGLFCAK
IFGPIKDWECNCGKYKRMKHRGIVCDKCGVEVIQSKVRRERMGHIELAAPVAHIWFLKGV
PSRIGTLLDMSLKQLEKILYFESYVCVDPGSTDLSEKELVPEDKLRTLMSEYGSSGFKVG
IGAEAIRDLLRKIDINALWDELQVKAKASASAAMKKKYAKRLKVLEAFRKSGNKPEWMIM
DVIPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELKAPGVIIRNEMRML
QEAVDALFDNGRRGRAIRGPNKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRTVIVVGP
ELRLHQCGLPKKMALELFKPFIFHKLEERGAATTIKSAKRLVEKERPEVWDVLDEVIREH
PVLLNRAPTLHRLGIQAFDPVLVEGKAIRLHPLVCAAFNADFDGDQMAVHVPLSVEAQVE
ARVLMMSINNILSPANGKPIAVPSQDMVLGCYWLTKERLGAKGEGKVFGSPEEVRIAFDA
REVEEHARIKVRIGGALVQTTVGRVLLSEILPAGMPFANANKLMTKKEMTKLIDAVYRQT
GHRDTVEFLDKIKDIGFQYATRAGVSICIDNMHIPTKKEDFIGKAQREVNEIEKQYAEGL
ITNGERYNKVIDIWAHVTEQVANEMMKELGAGGDPGKAESFNPIFMMADSGARGSSQQIR
QLGGMRGLMAKPSGEIIETPITANFREGLTVLQYFISTHGARKGLADTALKTANSGYLTR
RLVDIAQDVIISEIDCGTHDGIMVSALVEGGEIIQPLEERVLGRLAAEDIRDPVTGEIIV
SRNEEINEELTRSIVEAGVDRVKIRSVLTCVSQRGVCQACYGRDLARGRLVEKGEPVGVI
AAQSIGEPGTQLTMRTFHIGGTASKVVEQTVLEAKHAGRMKFMSFDAKKNADVHNGGIAV
RNKEGEWVVMNRNAKIAIIDDSGREREKYPVVYGAKIKIKDGDPVALGQKLVEWDPYSLT
ILTEVGGKVAYGDIVEGVTMKEEFDEVTGLSRKVIIEHTGQTLRPRVSIKDEGGKTAKVS
GAAGTVARYLLPVGAHIFVEKGAMVHPGDVLAKIPRETTKTKDITGGLPRVAELFEARKP
KEQAVISEIDGEVSYGGFVKGQRKVLVDNKMGDVKEYFIPKGKHVNVHEGDWVRAGEPLM
DGSANPHDILDVLGPNELQKYLVDEVQDVYRLQGVSINDKHIEIIVRQMLRKVRIEEPGD
TQFLPGSQVSKHVFEKENERVLESGGKPALGKPVLLGITKAALTTDSFISAASFQETTRV
LTEAAINGREDNLLGLKENVIVGRLIPAGTGFDEYRDTFVISEKPEPAAVAAAPAAVTAT
PDAAAAAATSDAARS
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
ttggaaggcgtatacacattgttcgaaaagccgcgggactcggtgtcgttcgattcgatg
cgcatccgcatcgcgtcgcccgagaagatccggtcctggtcgtacggcgaagtgaaaaag
ccggaaacgatcaactaccgatcgttcaagccggaaaaagacggattgttctgcgcgaag
attttcgggccgatcaaggactgggaatgcaactgcggcaaatacaagcgcatgaagcat
cgcggcatcgtctgcgataagtgcggcgtcgaagtgattcaatccaaagtgcgccgcgag
cggatgggccatatcgagctggccgcacccgtcgcgcatatctggtttctgaagggtgtg
ccgagccgcatcggcacgctgctcgacatgagcctgaagcagttggagaagattctctac
ttcgaaagctacgtgtgcgtcgatcccggatcgacggatctctcggaaaaggaattggtg
cccgaagacaagctgcggacgctcatgtccgaatacgggtccagcggattcaaagtcggc
atcggggccgaggcgatccgcgatttgctgcgcaagatcgacatcaacgccctgtgggac
gagctgcaagtcaaggccaaagcctccgcctcggcggcgatgaagaagaaatatgcgaag
cgccttaaagtacttgaggcgttccgcaagtccggcaacaagcccgaatggatgatcatg
gacgtcatcccggtgttgccgccggaattgcgtccgttggtgccgttggacggcggccgg
ttcgcgacgtccgacttgaacgatctctatcgtcgtgtgatcaaccggaacaaccggttg
aagcggctgatggaattgaaggcgccgggcgtcatcatccggaacgaaatgcggatgctg
caggaagcggtggatgcgctgttcgacaacggccgccgcggccgcgccatccgtggaccg
aacaagcgcccactcaagtccttgagcgacatgctcaagggcaagcagggccgcttccgc
caaaatctgttggggaaacgcgtcgactacagcggccgtaccgtcatcgtggtcggcccg
gagttgcgcctgcatcaatgcggcttgccgaaaaagatggccttggagttgttcaagccg
ttcatcttccacaagctggaagagcgcggcgcggcgacgaccatcaagagcgcgaagcgt
ctggtcgagaaggaacggcccgaagtctgggacgtgctggacgaagtgatccgcgagcat
cccgtgctgctcaaccgcgcacccacgctgcaccggctcggcattcaggccttcgatccg
gtgctggtcgagggtaaagccatccgtctgcatccgctcgtgtgcgccgcgttcaacgcg
gacttcgacggcgaccagatggcggtccacgtgccgctgtcggtggaagcgcaggtcgaa
gcgcgcgtgctgatgatgtcgatcaacaacattctctcgcccgccaacggcaagccgatt
gccgtgccgtcgcaggacatggtgctgggctgctactggctcacgaaggaacggctgggt
gccaagggtgagggcaaggtcttcggctcgcccgaagaagtgcggatcgcgttcgatgcg
cgcgaagtggaagagcatgcgcggatcaaggtccggatcggcggcgcgttggtgcagacc
accgtcggtcgcgtgctgctgtcggagatcctgccggccggcatgccgttcgcgaacgcg
aacaagctcatgaccaaaaaggaaatgaccaagctgatcgacgcggtgtaccggcagacc
ggccatcgcgacacggtcgagtttctcgacaagatcaaggacatcggcttccagtacgcg
acgcgcgccggcgtgtcgatctgcatcgacaacatgcacatcccgaccaagaaggaagac
ttcatcgggaaggcgcaacgcgaagtgaacgagatcgaaaagcagtacgccgaaggcttg
atcaccaacggcgaacggtacaacaaggtcatcgacatctgggcgcatgtgacggagcag
gtggccaacgagatgatgaaggagctcggcgcgggcggcgatcccggcaaggccgaatcc
ttcaatccgattttcatgatggccgactccggcgcgcgcggcagctcgcagcagatccgg
cagctgggcggcatgcgcggcctgatggccaagccgtcgggcgaaatcatcgaaacgccg
atcaccgccaacttccgcgaaggactgacggtgttgcagtacttcatctcgacgcacggc
gcccgcaaggggttggccgacaccgcgttgaagaccgcgaactccggctatctcaccaga
cggctggtggatatcgcccaggacgtgatcatcagcgaaatcgactgcggcacgcacgac
ggcatcatggtgagcgcgctggtcgagggcggcgagatcatccagccgctggaagagcgc
gtgctgggccggttggcggcggaagacatccgcgatccggtgaccggcgaaatcatcgtg
tcgcgcaacgaagagatcaacgaagagctgacgcggtcgatcgtggaggcgggcgtcgat
cgggtgaaaatccggtctgtgctcacctgtgtctcgcagcgcggcgtgtgccaggcctgc
tacggccgcgatctcgcgcgcgggcgcctcgtcgaaaagggcgagccggtcggcgtgatt
gcggcgcagtccatcggtgagccgggcacccagctcaccatgcggacgttccacatcggc
ggaacggccagcaaagtggtggagcagaccgtgctcgaagccaagcacgcgggccgcatg
aagttcatgagtttcgacgcgaaaaagaacgctgacgtgcacaacggcggcatcgccgtc
cgcaacaaggaaggcgaatgggtcgtcatgaaccgcaacgcaaaaatcgcgatcatcgac
gacagcggccgcgagcgcgagaagtatccggtcgtgtacggcgcgaagatcaagatcaag
gacggcgatccggtggccctgggccagaagctggtggagtgggatccctactcgctcacg
attctgaccgaggtgggcggcaaggtggcctacggcgacatcgtcgaaggcgtgacgatg
aaggaagaattcgacgaggtgacgggcctctcgcgaaaggtgatcatcgaacacaccggc
cagaccctgcgcccgcgcgtctcgatcaaagacgaaggcggaaagaccgccaaggtgtcc
ggcgcggccggcacggtcgcacggtacctgttgccggtgggcgcccacatcttcgtggaa
aagggcgccatggtccatccgggcgacgtgttggcgaagattccgcgtgaaacgaccaag
acgaaagacatcaccggcggtctgccgcgcgtggcggaactgttcgaggcgcggaagccg
aaggagcaggccgtcatcagcgagatcgacggtgaagtgtcctacggcggcttcgtcaag
ggtcagcgcaaggtgctcgtcgacaacaagatgggcgacgtgaaggaatacttcattccg
aaaggcaagcacgtgaacgtgcacgagggcgactgggtgcgcgcgggcgagccgctcatg
gacggttcggcgaacccgcacgacatcctggacgtgctcgggccgaacgagctgcagaag
tatctcgtggatgaagtgcaggacgtgtatcgcctgcagggcgtctcgatcaacgacaag
cacatcgagatcatcgtacggcagatgctgcgcaaggtgcgcatcgaagagcccggcgat
acgcaattcctgccgggcagccaagtcagcaagcacgtgttcgagaaggaaaacgaacgg
gtgctcgaaagcggcggcaagcccgcgttgggcaagccggtgctgctgggcatcaccaag
gccgcgttgacgaccgacagcttcatttccgcggcgtcgttccaggaaacgacgcgcgtg
ctgacggaagcggccatcaacggccgcgaagataatctgctcggtctcaaggaaaacgtc
atcgtcggtcggttgatcccggccgggaccgggttcgacgagtatcgcgacacgttcgtc
attagtgaaaagcccgagccggcggcggtggcggccgctccagcagcggtgaccgccact
ccggacgccgccgccgccgcggcgacgagcgatgctgcgcggtcttaa
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