Nitrospira moscoviensis: NITMOv2_1985
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Entry
NITMOv2_1985 CDS
T04041
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nmv
Nitrospira moscoviensis
Pathway
nmv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NITMOv2_1985 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmv03019
]
NITMOv2_1985 (deaD)
03009 Ribosome biogenesis [BR:
nmv03009
]
NITMOv2_1985 (deaD)
Enzymes [BR:
nmv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NITMOv2_1985 (deaD)
Messenger RNA biogenesis [BR:
nmv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NITMOv2_1985 (deaD)
Ribosome biogenesis [BR:
nmv03009
]
Prokaryotic type
rRNA helicases
NITMOv2_1985 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ALA58402
UniProt:
A0A0K2GCU7
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All DBs
Position
1860287..1862017
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AA seq
576 aa
AA seq
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MKHDHMPSSAVPAATGFSPGFAALGLEASLLASLEALGYEEPTPIQREAIPPLLAGRDLL
GQAATGTGKTAAFTLPLLQRIAHGTPARPAALILVPTRELAIQVAQAVQRYGKELRLGVL
AVYGGQAIGPQLHALKRGVEVVVATPGRALDHIRRGTLKLEHVGIVVLDEADEMLDMGFA
EDLDAILDRTPAAKQTALFSATMPPRIRSIAHRHLRDPVEITIAKEPVKAGTAPRVQQTA
YVVARSYREAALARVLDMAGPKSALIFCRTRVEVDDVTSMLNGRGHRAEAIHGGMNQAQR
DRVMQAFKSGRTELLVATDVAARGLDIPSVSHVVNYDLPSSAEIYVHRIGRTGRAGREGA
AITILDPREQRLLRSIEQHTKARVTVLPIPSVADLHARRLERTQAAVEDVLKDGDLKGFA
DVAERLAAAYPPADVAAAALKLLVRAQGGERPEQEIPAMPVRPPEFGRPAREAGRHRDAP
ADARRRPAGWTAQRRREAGMARVYIGAGRAAGIRPADLVGAIANEAKVSSNIIGAIEIED
RFSVVDVPEPMAPAIIEVLGRARIKGRKVPVRLFRD
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgaagcatgatcacatgccgtcctccgccgtgccggccgcgaccgggttttcgccgggc
ttcgcggcattgggtctcgaagcgtcgctgctcgcctcgctggaggcgttgggctacgaa
gaaccgacgccgattcagcgcgaggcgatccctccgctcctcgccggccgcgatctcctc
ggacaggcggccaccggcaccggcaagacggcggccttcacgttgcccctgctgcagcgc
atcgcgcacgggaccccggcgcgcccggcggcgctgattctggtgccgacgcgcgaattg
gcgatccaagtcgctcaggcggtgcaacggtacgggaaggaattgcggctcggcgtgctg
gccgtctacggcgggcaggccatcggcccgcagctgcatgccttgaagcgcggcgtcgag
gtcgtggtggccacgcccggccgcgcgctggatcatatccggcgcgggacattgaaactc
gagcacgtcggaatcgtcgtgctggacgaagcggatgagatgctcgacatgggattcgcc
gaggatctggacgcgattctcgaccggacgcccgcggccaagcaaacggccttgttctcc
gccacgatgccgccgcgcatccgctcgatcgcccaccggcatctccgcgatccggtcgag
atcaccatcgcgaaagaaccggtcaaggccggcacggcgccgcgcgtgcagcaaaccgcc
tatgttgtcgcgcgatcctatcgggaagcggcgctggcccgcgtgctcgacatggcgggc
cccaagtcggcgctcatcttttgccgcaccagagtggaagtcgacgacgtgacgtccatg
ctgaacggccgcggccatcgggccgaggcgattcacggcggcatgaaccaggcgcagcgc
gaccgggtcatgcaggcgttcaagagcggccgcaccgagctgctggtcgccaccgacgtg
gcggcgcgcggcctcgacattcccagcgtgtcgcacgtcgtcaactacgacctgccgtcc
tccgccgaaatctatgtccatcgcatcggccgcacgggccgggcgggccgcgaaggcgcg
gcgatcacgattctcgacccgcgcgagcagcgcctcttgcggagcatcgagcagcacacg
aaggcccgcgtcacggtcctgccgattccgagcgtggccgacctccacgccaggcggctg
gaacggacgcaggccgcggtggaagacgtcttgaaagacggagatctgaagggcttcgcg
gacgtggcggagcggcttgccgccgcctatccgccggccgatgtggcggcggccgcgttg
aagctgctggtccgggcacagggcggagagcggcccgagcaggaaattcctgcgatgcct
gtccggccgccggaattcgggcggccggcgcgggaggccggccggcaccgggacgcgcca
gccgacgcgcggcggcggccggcgggatggacggctcagcgccggcgggaggccggcatg
gcgcgcgtctacatcggcgcggggcgggcggcgggtattcggccggccgatctcgtcggc
gcgatcgcgaacgaggccaaggtgagctccaacatcatcggcgccatcgagatcgaagac
cgcttctccgtggtcgatgtgccggaacccatggcgccggcgatcatcgaggtgctcggc
cgcgcccgcatcaaaggccggaaagttccggtgcgcttgtttcgagactga
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