Nitrospira moscoviensis: NITMOv2_2096
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Entry
NITMOv2_2096 CDS
T04041
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
nmv
Nitrospira moscoviensis
Brite
KEGG Orthology (KO) [BR:
nmv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nmv03016
]
NITMOv2_2096 (rnd)
Enzymes [BR:
nmv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
NITMOv2_2096 (rnd)
Transfer RNA biogenesis [BR:
nmv03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NITMOv2_2096 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
ALA58513
UniProt:
A0A0K2GC38
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All DBs
Position
complement(1959433..1960623)
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AA seq
396 aa
AA seq
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MSRHPHYITSREALHELCGHLKGSRRLALDTEFVGEDSFVPKLELIQVATETTAAVIDFP
AVQAEGPLDMLWDIIRNPAIQKVVHAGRQDLDLFAVHAGEIPKPFFDTQIAAAMVGFGAQ
VAYSNLVQRVHGTKLAKAHTFTNWSARPLSPDQLAYALEDVTFLLAIHDHLHGRLSRLGR
LEWVHEEFSRLEGAVADTRREPQERYQRVRGWDTLKPKSAAVLRELAAWREGEAKRRNVP
RGRVMRDEVLLQLARHPPRHLHELRVVRGLHGSEVDRNGEAILGTIQAALALPPSAWPEV
PKERKPEPESAGLVEFLQAVMKARALEEEIAPALLATTADLQALVDAKDRTQLDLPLLKG
WRRELLGDTLLRLLEGKLSVRIDPASGTLICADRST
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgacaccctcactacattacgagccgggaggctctccacgagctgtgcggccac
ctcaagggcagccggcggctggctctggataccgagttcgtcggcgaagacagttttgtg
ccgaagctcgaattgattcaggttgcgacggagacgaccgcggcggtgattgattttccg
gcggtgcaggccgagggtccactcgatatgctctgggacatcatccgcaatccggccatc
cagaaggtggtgcatgccggccggcaggatttggatctcttcgccgtccatgccggagaa
attcccaaaccgtttttcgatacgcagatcgccgccgccatggtcggcttcggcgcgcag
gtggcctattccaacctggtgcagcgggtccacggcaccaagctggccaaggcccatacc
tttacgaattggagcgcccggcccctctcccccgatcagctggcctatgcgctggaggac
gtgacctttctcctggcgatccatgaccacctgcacggacgcctgtccagactgggacgg
ctggaatgggttcatgaagaattttcgcgtctggaaggcgcagtggccgacacgagacgt
gagccgcaggaacggtaccagcgggtccgcggctgggatacgctgaaaccgaaatcggcc
gccgtgctccgcgagttggcggcgtggcgggaaggggaggcgaagcgccgcaacgtaccg
cgcggccgcgtgatgcgcgacgaggtgttactgcaactggcccgccatccgccgcgccat
cttcacgagttgcgcgtcgtgcgcggtctgcatggatcggaggtcgatcggaacggggag
gcgatccttggcaccatccaggcggcattggccctgccgccgtcggcttggcccgaggtg
ccgaaagagcgcaaacccgagcccgagtccgccggtttggtggagttcctgcaagccgtg
atgaaagcccgcgcgctggaggaggagatcgctcccgcattgctcgccacgaccgccgac
ctccaagcgctggtcgatgcgaaagatcgcacccaactcgatctgcccttgctcaagggc
tggcgccgggaactcttgggcgacacgttgttgcgtttgctcgaaggaaaattgtccgtc
cgtatcgatcccgcttccggaacgctcatctgcgccgaccgctcgacgtag
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