Neisseria meningitidis 510612 (serogroup A): NMA510612_1524
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Entry
NMA510612_1524 CDS
T03438
Symbol
vacB
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
nmx
Neisseria meningitidis 510612 (serogroup A)
Pathway
nmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NMA510612_1524 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmx03019
]
NMA510612_1524 (vacB)
03016 Transfer RNA biogenesis [BR:
nmx03016
]
NMA510612_1524 (vacB)
Enzymes [BR:
nmx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NMA510612_1524 (vacB)
Messenger RNA biogenesis [BR:
nmx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NMA510612_1524 (vacB)
Transfer RNA biogenesis [BR:
nmx03016
]
Prokaryotic type
tRNA degradation factors
NMA510612_1524 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AHW75811
UniProt:
X5EQS2
LinkDB
All DBs
Position
1285895..1288270
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AA seq
791 aa
AA seq
DB search
MNKNIKSLNLREKDPFLSREKQRYEHPLPSREWIIELLERKGVPSKIEALVRELSIKEEE
YEFFERRLKAMARDGQVLINRRGAVCAADKLDLVKCRVEAHKDGFGFAVPLTPAKDGDFV
LYERQMRGIMHGDIVTVRPAGMDRRGRREGTVLDIVERAQSKVVGRFYMDRGVAILEPED
KRLNQSIVLEPDGVARFKPESGQVIVGEIEVYPEQNRPAVAKIIEVLGDYADSGMEIEIA
VRKHHLPHQFSEACAKAAKKIPDHVRKSDLKGRVDLRDLPLVTIDGETARDFDDAVFAEK
IGRNYRLVVAIADVSHYVRPDDAIDTDAQERSTSVYFPRRVIPMLPENLSNGICSLNPHV
ERLCVVCDMVITYAGNIKEYRFYPAVMRSHARLTYNQVWKWLSGGIEHPFKTQIDTLYKL
FKILQKKRFERGAVEFDSIETQMLFDDNGKIEKIVPVVRNDAHKLIEECMLAANVCAADF
LLKNKHTALFRNHLGPTPEKLAALREQLGLLGLQLGGGDNPSPKDYAALAGQFKGRPDAE
LLQVMMLRSMQQAVYEPHCDGHFGLAYEAYAHFTSPIRRYPDLTVHRAIKAVLNQQTYTP
KKSWQALGVHTSFCERRADDASRDVENWLKTYYMRDKVGEVFEGKISGMTSFGIFVTLDG
IHIDGLVHISDLGEDYFNFRPEIMAIEGERSGIRFNMGDRVAVRVARADLDDGKIDFVLI
AGGSGRGRKVKSSASAKPAGTAGKGKPKTAAEKKTARGGKVRGRGASAAAESRKKAKKPV
PIKVKKRKGKS
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaatattaaatctttaaatttacgggaaaaagacccgtttttaagtcgtgaa
aaacagcgttatgaacatcctttgcccagtcgggaatggataatcgagctgcttgaacgt
aaaggcgtaccatccaagattgaagctttggtacgcgaattgtcgattaaggaagaagag
tacgaatttttcgaacgtcgtctgaaggcgatggcgcgggacggtcaggttttaatcaac
cgtcggggcgcggtttgcgcggcggacaaattggatttggtcaaatgccgtgtcgaggcg
cacaaagacggcttcggtttcgccgtgccgctcacgcccgccaaagacggtgattttgtt
ttgtacgaacgccagatgcgcggcattatgcacggcgatattgtcactgttcgtcctgcc
ggcatggaccgtaggggccgccgcgaagggacggttctggatattgtcgaacgcgcgcaa
agcaaagtggtcggccgtttctatatggataggggcgtggcgattttggagccggaagac
aagcgtctgaaccaaagcatcgtattggaaccggacggcgtggcgcgtttcaaacctgaa
tccggtcaggtcatcgtcggcgaaattgaggtttatcctgagcaaaaccggccggcagtg
gcaaaaatcatcgaagttttgggcgattatgccgacagcggcatggagattgaaattgcc
gtgcgcaagcatcatttgccgcaccaattcagtgaagcgtgtgccaaagccgcgaaaaaa
attcccgaccatgtacgcaaaagcgatttgaaaggccgcgtcgatttgcgcgacctgcct
ttggtaacgatagacggcgaaacggctcgagattttgacgatgcggtgtttgccgagaaa
atcggacgcaattaccgtctggtcgtggcgattgccgatgtcagccattatgtccgcccc
gatgacgctatcgacacggacgctcaggaacgcagcaccagtgtttacttcccgcgccgc
gtgattcccatgttgccggaaaacctgtccaacggcatctgctcgctcaatcctcatgtc
gagcgtttgtgtgtggtgtgcgatatggttatcacttacgcgggcaatatcaaagaatac
cgcttctaccccgccgtgatgcgctctcatgcccgcctgacctacaaccaagtttggaaa
tggctttcaggcggcatcgagcatccgttcaaaacccaaatcgacacgctttacaaactc
ttcaaaatccttcagaaaaagcgtttcgaacgcggggcggtggagtttgacagcatcgaa
acccaaatgcttttcgacgacaacggtaaaattgaaaaaatcgtccccgttgtccgcaac
gatgcccacaagctgattgaagaatgtatgttggcggcaaacgtttgcgcagcggatttt
ctgttgaaaaacaagcataccgcattgttccgcaaccatttggggcccacgcccgaaaaa
ctcgccgccttgcgcgagcagctcggtctgttggggcttcaacttggcggcggcgacaac
ccgtcgccgaaagactatgccgcgcttgccggacagttcaaaggcaggccggatgccgaa
ttgctgcaagtcatgatgttgcgctccatgcaacaggcggtttacgaaccgcattgcgac
ggacactttggtcttgcctacgaagcatacgcccacttcacctcgcccatccgccgctat
cccgacctgaccgtacaccgcgccatcaaagccgtgttgaatcagcaaacctacacgcca
aaaaaaagctggcaggctttgggcgtgcatacctcgttctgtgagcgccgtgccgacgac
gccagccgcgacgtggaaaactggctgaaaacctattatatgcgcgataaggtcggcgaa
gtattcgaaggtaaaatctccggcatgaccagttttggtatctttgtaacactggacggc
atccacattgacggcttggtgcatatcagcgatttgggcgaagactatttcaacttccgc
cccgaaatcatggcaatcgaaggcgaacgcagcggcatccgtttcaacatgggggacagg
gttgccgtccgggtcgcccgtgccgatttggatgacggaaaaatcgattttgtcctgatt
gccggggggagcggcagggggcggaaagttaaatcatccgcgtctgccaaaccggcaggg
acggcggggaaagggaagccgaaaaccgccgccgagaaaaaaacagcccgaggcggcaaa
gtaaggggaaggggcgcgtctgccgccgcagaatcgaggaaaaaggcaaagaaaccggtt
ccgattaaggtaaaaaaacggaaaggcaaatcataa
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