Nosocomiicoccus massiliensis: CJ229_004070
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Entry
CJ229_004070 CDS
T09499
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
nmy
Nosocomiicoccus massiliensis
Brite
KEGG Orthology (KO) [BR:
nmy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
nmy03009
]
CJ229_004070 (rlmD)
Enzymes [BR:
nmy01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
CJ229_004070 (rlmD)
Ribosome biogenesis [BR:
nmy03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
CJ229_004070 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_15
Cons_hypoth95
MTS
RrnaAD
Methyltransf_25
N6_N4_Mtase
TRM
DOT1
PrmA
Methyltransf_4
Methyltransf_32
TPMT
Methyltransf_11
DUF4026_N
Motif
Other DBs
NCBI-ProteinID:
WOS96891
UniProt:
A0AAF1BVY4
LinkDB
All DBs
Position
complement(760154..761485)
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AA seq
443 aa
AA seq
DB search
MDNTYKSKVSGYTHDGRGVVKENHLAFIDGAIRNETITYTLTQTGNKFSQGKVVDVLSRS
ENRVNPPCKYYDICGGCHVQHMNETEERDFKKEAVLNTLRRHIKDIEVNDTVELDELYYY
RNKTVFAVREQRGKVVIGQFQKNGKDVVDIDHCMIQKRSHNEIIEVLRKLIVKYDISIYN
EEKHTGFLRHLIIRSNHDDSEIQIVFVTNGKSYTFKPLVDELVQDARITSVIQNIHTERT
NLVTSYNSVVRYGKSYIVDELLNKQFKVKDLSFYQVNHEITEKMYSEAIERAALTKTDVV
IDAYSGIGTIGQLLADKVDEVIGVEIVESAVEDARDNAKLNDIKNATYINGKAEEKIKEI
VNEKHIDVLFIDPPRKGCDRTFLDTVLQVEPERIVYISCNPATLGRDLKILSEKYTIGSV
TPYNMFSKTYHVEALVPLTRKND
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggacaatacatataaaagtaaagtgtcaggatatacacatgacggtagaggtgttgta
aaagaaaatcacctcgcgtttatagatggcgctataagaaatgaaacaattacatataca
ctcactcagactggtaataagtttagtcaggggaaagtagtagatgttttatcgagaagt
gaaaatcgtgtaaatccaccgtgtaaatattatgacatctgtggtggatgccacgttcaa
catatgaatgaaaccgaggaacgagactttaaaaaagaagcggttttaaatacgttaaga
cgtcatattaaagatatagaagtgaacgatacagttgaacttgacgaactatattattac
cgaaataaaacagtgtttgcagtgagagaacagcgtggtaaagtggtcatcggtcaattt
caaaaaaatggtaaagacgtcgtcgatatcgatcattgtatgattcaaaaaagaagtcat
aacgagatcatcgaagtgttaagaaaactgatagtaaaatacgacatttcaatttacaat
gaagagaaacatactgggtttttaaggcacttaatcatccgttctaatcacgatgacagt
gaaatacaaatcgtgtttgttacgaatggtaaatcatatacatttaaaccattagtcgat
gaactcgttcaagacgctagaattacaagtgtcattcaaaacattcacactgaaagaaca
aatctcgtcacgagttacaactcagtcgtacgatacggtaagtcatatatagtggatgag
ttattaaataaacaatttaaagtgaaagacttatcgttttatcaagtaaatcatgaaatt
acagaaaagatgtatagtgaagcaatcgaacgggctgcactaacaaaaacagacgtcgtc
atcgatgcgtattcaggtattggtacgatcggtcaattattagcagacaaagtggatgaa
gtaatcggtgtagaaatcgtcgaaagtgcagtcgaggatgcaagagacaatgcaaagtta
aacgacataaaaaatgcgacgtatataaatggtaaagctgaagagaaaattaaagagatt
gtaaacgaaaaacatatcgatgtactatttatagatccaccgaggaaagggtgcgaccgt
acatttttagatacagttttacaagtggaaccagagagaattgtgtatatctcatgtaat
ccagcaacacttggaagagatttaaaaatattaagtgaaaaatatacaatcggttcagtc
acgccgtacaatatgttttcaaagacgtatcatgtggaggctctagtgccactgacaagg
aaaaatgattaa
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