Nosocomiicoccus massiliensis: CJ229_005410
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Entry
CJ229_005410 CDS
T09499
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nmy
Nosocomiicoccus massiliensis
Pathway
nmy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nmy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CJ229_005410 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nmy03021
]
CJ229_005410 (rpoC)
03400 DNA repair and recombination proteins [BR:
nmy03400
]
CJ229_005410 (rpoC)
Enzymes [BR:
nmy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CJ229_005410 (rpoC)
Transcription machinery [BR:
nmy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CJ229_005410 (rpoC)
DNA repair and recombination proteins [BR:
nmy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CJ229_005410 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WOS95539
UniProt:
A0AAF1BM04
LinkDB
All DBs
Position
complement(1033201..1036842)
Genome browser
AA seq
1213 aa
AA seq
DB search
MIDVNRFQYMKIGLASPEKIRSWSSGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDWEC
ACGKYKRIRHKGHVCENCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRSLEEVIYFASYVVIEPGPTGLEKRDLLSEREYRDYYMEYGDRFNAKMGAEAIKELLE
NIDLDKELDQLKEELETATGQRLTRAIRRLEVVEAFRNSGNKPEWMVLDALPVIPPDIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPRE
MALELFKPFVMRELVKRELATNIKNAKNKIERLDESIWDVLEDVIREHPVLLNRAPTLHR
LGIQAFEAVLVEGRAIKLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAASNIL
NPKDGKPVVTPSQDMVLGNYYLTLEKPGAKREGRIFKDFEEVVMAYRSGYASLHTRIGVH
TGAMSEEKIAEENRGKILMTTVGKVIFNEIMPPSFPYLNEPTRENLERKTPDRFFIKAED
LGEAGLVGKFKEQEPVKSFDKKFLGQIIAEVFNKFHITETSVMLDRMKDLGFKYSTRAGI
TVGVSDIVVLPNKQKLIEATEEKVETVQRQYDRGLITEEERYNTVIKLWTDIKDEIQDKL
MDSLDKFNPIFMMADSGARGNASNFTQLAGMRGLMANPSGQIIELPIKSSFREGLTVLEY
FISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREQDCGTDKGLKVSEIREGGEVI
EPLFDRLEGRYAKETVRHPNTNEVIVGSNELITTDIAKEIVNAGIESVVIRSAFTCNTRY
GVCEKCYGKNLATGEKVEVGEAIGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITMGLPRI
QELFEARNPKGEAVISEIEGTIASIEMIKDRQQEIKVKGDEETRTYTAPANARVIVEEGD
KVSPGEMLTDGSIEPKNLLKVAGLNKTQEYLLKEVQKVYRSQGVEIDDKHVEVMVRQMLR
KVRIIDAGETSLIPGALVDIHTFQEANKVVFKERKRPATAKPVLLGITKASLETESFLSA
ASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMNRYRDIDIDVEGQDERLQL
EAEEREAELVEEN
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgatagatgtaaatagatttcaatatatgaaaattgggctggcgtcacctgaaaaaatt
cgctcatggtcgagcggtgaggttaaaaagccagaaacaattaactatagaactttaaaa
ccagaaaaagatggactgttctgtgagaagattttcggtccaacaaaagactgggaatgt
gcgtgtggtaaatataaacgtattcgccataaaggacatgtttgtgaaaactgtggtgta
gaagtcacacgtgcgaaagtacgccgtgagagaatggggcacattgaacttgctgcccct
gtctcacacatttggtactttaaaggaatcccttcacgtatgggattacttttagatatg
tcaccacgttcattagaagaagtaatttactttgcgtcatacgtcgtcatcgaaccgggt
ccaacagggcttgaaaagcgtgacttattaagtgaacgtgaatatcgtgattactacatg
gaatacggtgacagatttaacgctaaaatgggtgcagaagcaattaaagaattgcttgaa
aacatcgatttagataaagaactcgatcaattaaaagaagagttagaaacagcgacagga
caacgtttaacacgtgcaattcgtcgtttagaagtcgttgaagcatttagaaactcagga
aacaagcctgagtggatggtactagacgctctaccagtcattccaccagacattcgtcca
atggtgcagttagacggtggacgttttgcaacgagtgacttaaacgatttatatcgccgt
gtaattaaccgtaacaaccgcttaaaacgtttattagatctcggtgcacctgggatcatc
gtccaaaacgaaaaacgtatgttacaagaagcagtcgatgctttaatagataacggtcgt
cgtggacgtccagttactggaccaggaaaccgtccgttaaaatcactttcacacatgtta
aaaggtaagcaaggacgtttccgtcaaaacttactcggtaaacgtgtagactactcaggc
cgttcagtaatcgtcgttggtccaaacttaaaaatgtaccaatgtggattaccacgtgaa
atggcattagagctatttaaaccattcgttatgagagaactcgtgaaaagagaactcgct
acgaacattaaaaacgcgaaaaataaaatcgaacgtttagatgagtcaatttgggacgtt
ttagaagacgttatccgtgaacacccagtgttacttaaccgtgcaccaacacttcacaga
cttggtatccaagcgtttgaagctgtactcgttgagggacgtgcaattaaattacaccca
cttgtaacgacagcatataacgcggactttgacggtgaccaaatggcggtacacgtacca
ctttcaaaagaagcacaagcagaagctcgtatgttaatgcttgcagcatcaaacattcta
aacccgaaagatggtaaaccagttgtaacaccgtcacaagacatggtacttggtaactac
tacttaacgttagaaaagccaggtgcaaaacgtgaaggtcgtatctttaaggactttgaa
gaagttgttatggcatatcgctctggatatgcatcactgcatacgagaattggtgtgcat
acaggtgcaatgtctgaagaaaaaatcgctgaagaaaaccgcggtaagatcttaatgacg
acagttggtaaagtaatctttaacgagattatgcctccgtcattcccttacttaaacgaa
ccaacgcgtgaaaacttagagcgtaaaacgccagaccgtttcttcatcaaagcagaagac
cttggtgaagcgggattagttggtaagtttaaagagcaagaacctgtaaaatcattcgat
aagaaattcttaggtcaaatcatcgctgaagtattcaataagttccacattactgaaacg
tcagtcatgttagaccgaatgaaagatttaggtttcaaatactcaacgcgtgcaggtatt
acagttggggtatcagatatcgttgtcttaccgaacaagcagaaacttattgaagcgaca
gaagaaaaagttgaaacagttcaaagacaatatgaccgtggtttaattacagaagaagag
cgttacaacacagttattaagctatggacagatattaaagacgaaatccaagataaactg
atggattcgttagataaatttaacccgatcttcatgatggcagactctggtgcccgtggt
aacgcgtctaactttactcagcttgcaggtatgcgtggacttatggcgaacccgtcaggt
caaatcattgagttaccgatcaagtcaagcttccgtgaagggttaacagtactcgagtac
ttcatctcaacacacggtgcgcgtaaaggattagccgatacagcacttaagactgcagac
tcaggttacttaacgagaagacttgtagacgtggctcaagacgtaatcgtccgcgagcaa
gattgtggaacagacaaagggcttaaagtatcagaaattcgtgaaggcggagaagtaatc
gagccgttatttgaccgtctagaaggacgttacgcaaaagaaacggttagacacccaaat
acgaacgaagtcatcgttggttcaaatgaactgatcacaacagatatcgcaaaagaaatc
gttaatgcaggtattgaatcagtagtcattcgttcagcattcacatgtaacacacgttac
ggtgtatgtgagaaatgttacggtaaaaaccttgcgactggtgaaaaagttgaagtcggt
gaagcgattggtacaatcgcggcgcaatcaatcggtgagccgggtacacagttaacgatg
cgtacattccacacaggtggggttgcaggatcagacattacgatgggtcttccacgtatc
caagaattattcgaagcgcgcaacccgaaaggggaagcagtcatttcagaaattgaagga
acaatcgcttcaatcgaaatgattaaagaccgtcaacaagaaattaaagttaaaggtgac
gaagaaacacgtacgtacacagcaccagccaatgcgagagtaatcgtagaagaaggagac
aaagtatctccaggtgaaatgctaacagacggttcaatcgagcctaagaacttattaaaa
gttgcaggtttaaacaagacgcaagaatatctattaaaagaagtacaaaaagtatatcgt
tcacaaggggtagaaatcgacgacaaacacgtcgaagtaatggtgcgtcaaatgttacgt
aaagtacgtatcatcgacgcaggagaaacatcacttatcccaggtgcgttagtagatatc
cacacgttccaagaagcaaacaaagtcgtattcaaagaaagaaaacgaccagcgacagca
aaacctgtattactaggaattacaaaagcatcacttgaaacagaaagtttcttatccgca
gcgtcattccaagaaacaacacgtgtcttaacagatgcggcaatcaaaggaaaacgcgac
gacttactcggactgaaagaaaacgtcataatcggtaaattgatcccagcaggaacagga
atgaaccgataccgcgacatcgacatcgatgtcgaaggacaagacgaaagattgcagtta
gaagctgaagagagagaagcggaactagttgaagaaaattaa
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integrated database retrieval system
