Candidatus Nitrospira neomarina: PQG83_01080
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Entry
PQG83_01080 CDS
T09428
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
nneo
Candidatus Nitrospira neomarina
Brite
KEGG Orthology (KO) [BR:
nneo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nneo03032
]
PQG83_01080
03400 DNA repair and recombination proteins [BR:
nneo03400
]
PQG83_01080
Enzymes [BR:
nneo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PQG83_01080
DNA replication proteins [BR:
nneo03032
]
Prokaryotic type
DNA Topoisomerases
PQG83_01080
DNA repair and recombination proteins [BR:
nneo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PQG83_01080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
WNM62366
UniProt:
A0AA96GRS3
LinkDB
All DBs
Position
244320..245435
Genome browser
AA seq
371 aa
AA seq
DB search
MTAKASPAPVDHPIISAKAAGLRYVTDECPGLVRKRTGKGFRYVAHNGKHVRNPDVLGRI
KALAIPPAWQDVWVCLHPDGHLQATGRDARGRKQYRYHPQWRRIRDEVKYEHLTAFAQAL
PRIRRIVKRDLSQKGLPRTKILATVVRLLETSLIRVGNEAYARDNESFGLTTMRDRHVNV
KGSTLTFQFKGKSGIDHAVDLTDPRLAKIVRQSQELPGYELFQYLDENGAKQSIESTDVN
AYLREMTGQDFTAKDFRTWAGTVLAARALQEFQSFDSQAQAKRNVVRAIESVAKRLGNTK
AVCQKCYVHPQVLNAYMEGTLLQTLRKRVNRELSQSLRGLPAEEAAVLTLLQQQLKSEKR
PNKNTSRKGKV
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
gtgacagctaaggcatcacctgcacccgtagatcatccgattatttcggcgaaagctgcc
ggactccgctatgtcacggacgagtgcccggggttggtccgaaaacgaacaggaaaagga
tttcgttatgtcgcacataatggcaaacacgtccgtaatcctgacgtattagggcgcatt
aaggctttggccattccgcctgcctggcaggatgtgtgggtgtgtttgcacccggacgga
caccttcaggcgacgggccgggatgcgagaggccgtaagcaatatcgatatcatccgcaa
tggcggagaatccgggatgaggttaaatatgaacatttgacggcttttgctcaagccttg
ccccgaattcggaggatcgtcaagcgggatctttctcaaaaaggtttaccgcgaaccaaa
attctggcgacggtcgtccggcttcttgaaacttctttaattcgagtcgggaatgaagcc
tatgcgcgtgacaatgagtccttcggattaacgaccatgagggaccggcatgtcaatgtg
aagggctctaccctcacatttcaatttaaagggaaaagtggtatcgatcatgccgtcgat
cttaccgatccgcggttagcgaaaattgtcaggcaatcgcaagagctccccggctatgaa
ctctttcaatatctcgatgaaaatggtgccaaacaatccatcgaatcaaccgatgtgaac
gcgtatctcagggagatgaccggacaggattttaccgccaaagattttcgcacgtgggca
gggacagtcctggcggccagagcgcttcaggagtttcaatcgtttgactcccaggctcag
gcaaaacgaaatgtggtacgggccatcgagtctgtggccaaacgactgggtaatacgaaa
gcggtctgtcagaaatgttatgtccaccctcaagtgctgaatgcgtatatggaaggcact
ctccttcaaacacttcgcaaacgggtgaatcgggagctttctcaatcgcttcgcggttta
cctgcggaggaagcggctgttttgacgttgcttcaacagcaattaaagtctgagaaacgg
ccaaacaagaacacatccaggaagggaaaggtgtaa
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