Candidatus Nitrospira neomarina: PQG83_05875
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Entry
PQG83_05875 CDS
T09428
Name
(GenBank) hypothetical protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
nneo
Candidatus Nitrospira neomarina
Pathway
nneo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nneo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PQG83_05875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nneo03400
]
PQG83_05875
Enzymes [BR:
nneo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
PQG83_05875
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PQG83_05875
DNA repair and recombination proteins [BR:
nneo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PQG83_05875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zn_ribbon_6
Zn_ribbon_IS1595
Zn_ribbon_PaaD
DUF5817
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
WNM63281
UniProt:
A0AA96GTG3
LinkDB
All DBs
Position
complement(1321894..1322691)
Genome browser
AA seq
265 aa
AA seq
DB search
MPELPDVEVFKHFVDDTSLHQRIARSAILHPKIVRSMPGKKLTQLLKGRKLENTHRHGKV
LFIELDAAKGWLWFHFGMTGYFTSGKKQDPEPENHIRFILKFTTGCLLRFHCSRLFGQAG
WAADVEDYLLRHKLGPDALAMSQKEFIQRCQNTPGGVKAALMNQSLIAGIGNVYSDEILF
KSRLHPQHSMKSLDTATLRRLYRNLRSVLMRAIKYHADPQKMPDSWLLHHRHAKATCPRC
GGRITRMTVHQRSAYFCQSCQRKRA
NT seq
798 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattgccggatgtggaagtgtttaaacattttgtggatgatacttctctgcac
caacgcattgcccgcagtgcgatccttcatcccaaaatcgtccggtcgatgccggggaaa
aaattaactcaactcctcaaaggtcggaagctggagaacacccaccgccacggcaaagtg
ctgtttatcgagctggatgctgctaaaggctggctgtggtttcatttcggcatgaccgga
tacttcacctccgggaaaaaacaggatccggagccggagaaccacattcgctttatactc
aaattcacgactggatgcctgttacgttttcattgctcgcggttattcggtcaggcggga
tgggcggctgatgtcgaagattatcttctacgccataagctgggacctgacgcgctggcc
atgtcccaaaaggaatttattcaacgatgtcagaatacacccggcggggtgaaagccgcg
ctgatgaaccagtctcttatagccggaatcggcaatgtgtattccgatgaaatcctcttt
aaaagccgtcttcatcctcagcattccatgaaatctttagataccgccaccttgcgtcgt
ctctaccggaacctgcggtcggtgctcatgcgggctataaaatatcacgccgatcctcaa
aagatgccggattcatggctcctccaccatcgacatgcgaaagcaacctgtccccgctgc
ggaggaagaataacccggatgacggttcaccagcggtccgcgtatttttgtcagtcatgc
cagcgtaaaagggcatga
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