KEGG   Candidatus Nitrospira neomarina: PQG83_07055
Entry
PQG83_07055       CDS       T09428                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
nneo  Candidatus Nitrospira neomarina
Pathway
nneo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nneo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PQG83_07055
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nneo03019]
    PQG83_07055
Enzymes [BR:nneo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     PQG83_07055
Messenger RNA biogenesis [BR:nneo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     PQG83_07055
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 Cas3-like_C_2 Methyltr_RsmB-F HEM4 P-loop_SecA
Other DBs
NCBI-ProteinID: WNM63504
UniProt: A0AA96GJC5
LinkDB
Position
complement(1579622..1580893)
AA seq 423 aa
MSSTALSQFGALGVSATLVGVLNKLGLTEPTPIQVQAIPPALEGRDVLGCAQTGTGKTAA
FVIPIIERLVDGPKGHPRAMILAPTRELAFQIQETVDKFGRVRGIFATTLVGGADMHAQV
RGLRQRPDIIVATPGRLLDHMWQGTVSFTKLRMVVLDEADRMLDMGFAPQLNQIIEALPE
TRQTLLFSATMPNNLADLARMSLNDPFKALVAKSATPAEGVTHTVHHTANSDKTSLLLSI
LKETEGSVLVFTRTKHRADRIGETLEKVGCRVAVLHAGRRLPQRRAALEGFRRGRFEILV
ATDIAARGLDVDNIQHVINYDLPHVPEDYIHRIGRTARKNTKGWATSFVTGEDNRSLRMI
EKLLGKAVPCAPGSRPPMPAIAPERRGPRPNSAGRGFGTPRSGSPGRHDRPAVRRPRPST
LAS
NT seq 1272 nt   +upstreamnt  +downstreamnt
atgtcttcaactgcgttgtcacagtttggtgcgcttggtgtgtctgctactttggttggg
gtgttgaataagctcggtttaacggaaccgaccccgattcaagtacaggccatccctccg
gctttggaaggtcgggatgtgttggggtgtgcccagaccggaaccggaaaaaccgccgcc
tttgtcattcctatcattgaacgtttggtagatggtcctaagggccaccctcgtgcgatg
attttagcgccaacccgggagttggcatttcaaattcaagaaaccgttgataagttcggg
cgtgtgcgcgggatctttgcgaccacgctggtgggtggtgctgatatgcatgcgcaagtt
cgtggattacggcaacgtcccgatatcatcgtcgcgacgccgggtcgccttctcgaccat
atgtggcaggggacggtttcgtttaccaagcttcggatggtggtcctcgacgaggccgat
cgaatgcttgatatggggtttgcgcctcagctcaatcaaatcattgaggcattaccggaa
acccggcaaaccttactcttctcggcaaccatgccgaataatttggctgatttggctcgg
atgtcactcaacgatccgtttaaagctctggtagcgaaatcggccacaccggctgaaggc
gtcacccatacggtgcatcacactgccaattccgataaaacctcactcctgctatctatt
ttaaaggagacagaggggtcagtccttgtctttacccggaccaaacatcgtgccgaccgg
atcggggaaaccctggaaaaggtcggttgtcgcgtggcagtgttacatgcgggacgacga
cttccccaacgccgtgcggcgttggaagggtttcgccggggacggtttgaaattttagtt
gcgaccgatattgccgcccgtgggttggacgtggacaatattcaacatgtgatcaattat
gatttgcctcatgtaccggaagattatatccatcgtattggtcggacggcgcggaagaat
accaaaggttgggccacaagttttgtcaccggtgaagacaatcgttcgttacgaatgatt
gaaaaattgctggggaaggcggttccctgcgcacctggaagccgtccgccaatgccggcc
attgcaccggagagacgtgggcctcggcctaattccgcgggtagaggatttggtactcct
cgatcggggagccctggcaggcatgatcgaccggctgttcgtcgaccgcgtccgtctacc
ttagcttcctaa

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