Candidatus Nitrospira neomarina: PQG83_08880
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Entry
PQG83_08880 CDS
T09428
Name
(GenBank) cadherin domain-containing protein
Organism
nneo
Candidatus Nitrospira neomarina
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_4
Cadherin
Big_9
Motif
Other DBs
NCBI-ProteinID:
WNM63853
UniProt:
A0AA96JXW9
LinkDB
All DBs
Position
complement(1997765..2003428)
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AA seq
1887 aa
AA seq
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MTTAFSTATDTATITVTAVNDAPVLTPASPTLTTITEDDTSNSGDLVSAIVGSSIADVDT
GALEGIAITGLTSGNGTWEYDIGSGWTAVGAVSDVTALLLRSTDSLRFVPDGQNADSATV
TYRAWDQTSGTEGTKVDASTNGGTTAFSTATDTASITVTAVNDAPVLTPASPTLTTITED
QTNNSGDLVSAIVGSSIADVDTGALEGIAITALTSGNGTWEYDIGSGWTAVGAVSDVTAL
LLRSTDSLRFVPDGQNADSATVTYRAWDQTSGTEGTKVDASTNGGTTAFSTATDTASITV
TAVNDAPVVTPAAPTFTTITEDDTSNSGHLVSAIVGASITDVDTGAVEGIAITGLTSGNG
TWEYDIGSGWTAVGAVSDASALLLRATDSLRFVPDGQNADSATVTYRAWDQTSGTEGTKV
DASTNGGTTAFSTATDTASITVTAVNDAPVLTPASPTLTTITEDDTSNSGDLVSAIVGAS
ITDVDTGAVEGIAITALTSGNGTWEYDIGGGWTAVGAVSDASALLLRSTDSLRFVPDGQN
ADSATVTYRAWDQTSGTEGTKVDASTNGGTTAFSTATDTATITVTAVNDAPVLTPASPTL
TTITEDDTSNSGDLVSAIVGSSIADVDSGAVEGIAITGLTSGNGTWEYDIGGGWTAVGAV
SDASALLLRSTDSLRFVPDGLNADSATVTYRAWDQTSGTEGTKVDASTNGGTTAFSTATD
TASITVTAVNDAPVVTPAAPTLTTITEDETSNSGHLVSAIVGASITDVDTGAVEGIAITG
LTSGNGTWQYDIGSGWTAVGAVSDASALLLRSTDSLRFVPDGQNADSATVTYRAWDQTSG
TEGTKVDASTNGGTTAFSTATDTASITVTAVNDAPVLTPAAPTLTTITEDQTNNSGDLVS
AIVGASITDVDTGAVEGIAITGLTSGNGTWEYDIGGGWTAVGAVSDASALLLRSTDSLRF
VPDGLNADSATVTYRAWDQTSGTEGTKVDASTNGGTTAFSTATDTASITVTAVNDAPVVT
PAAPTLTTITEDETSNSGHLVSAIVGSSIADVDTGAVEGIAITGLTSGNGTWEYDIGGGW
TAVGAVSDASALLLRSTDSLRFVPDGQNADSATVTYRAWDQTSGTEGTKVDASTNGGTTA
FSTATDTASITVTAVNDAPVVTPAAPSLTTITEDQTNNSGDLVSAIVGSSIADVDTGAVE
GIAITGLTSGNGTWEYDIGSGWTAVGAVSDASALLIRATDSLRFVPDGLNADSATVTYRA
WDQTSGTEGTKVDVSSNGGTTAFSTATDTATITVTAVNDAPVLTPASPTLTTITEDQTNN
SGDLVSAIVGSSIADVDTGAVEGIAITGLTSGNGTWEYDIGGGWTAVGAVSDASALLLRA
TDSLRFVPDGQNADSATVTYRAWDQTSGTEGTKVDASTNGGTTAFSTATDTASITVTAVN
DAPVITSNGGGPTAAVNAVENQTSVTTVTATDVDLPADTLTFTIIGGADASLFSISSGTG
VLAFNTAHDFESPADADGNNVYEVTVQVSDGNGGVDTQAISVTVTDDNDVPIITSNGGGP
TAVMNTAENQTYVTTVTATDVDMPANPLTYTILGGADAALFTIDPTTGVLTFTVPPDFET
PTDADANNIYEVVVQVSDGNGGVDSQMIQVTVTDIQEGMPQTPSPQPDPTPTPAPSPRPT
PEAPLDTNTSPPGTPPIGFPDSFGGQPPAGRDLTRHPDPQSVPDWNRVLEVAPFLRPGTF
GTTSEQIRAYTPAPVLLSSIELSQEFLQQLNSFADDLKETTQQTIEERSFFIKMMEYTGL
GVSGVLLAWLVRSGTLLASVLATLPAWRNFDPIAILDMDQKSRESLTKKMKEAAEKETRE
HHGLDRMLDKNSDQSVRPSSTFSSGSS
NT seq
5664 nt
NT seq
+upstream
nt +downstream
nt
atgacgacggccttctcgacggcgacggatacggcgacgatcacggtgacggcggtcaat
gacgcgccggtgttgacgccggcgagtcccacgctcaccaccatcaccgaagatgacacg
agcaacagcggcgacctggtgtcggccatcgtgggcagttcgattgccgatgtggacacg
ggggcgctcgagggcatcgcgatcacgggcctgacgagtggcaacggcacgtgggagtat
gacatcgggagcggctggacggcggtgggggcggtcagtgatgtgacggccttgctcttg
cgcagcaccgatagtctccggtttgtcccggacgggcagaatgccgacagtgcgacggtg
acctaccgggcgtgggatcagacgagcgggacagaaggcacaaaggtggatgcgtcgacc
aatggcgggacgacggcctttagcaccgcgacggatacggccagtatcacggtgacggcg
gtcaacgatgcgccggtgctgacgccggcgagtcccacgctgacgacgatcaccgaagat
cagaccaataatagcggcgacctggtgtcggccattgtgggcagttcgattgccgatgtg
gacacgggggcgctcgagggcatcgcgatcaccgccctcacgagtggcaacggcacgtgg
gagtatgacatcgggagcggctggacggcggtgggggcggtcagtgatgtgacggccttg
ctcttgcgcagcaccgatagtctccggtttgtgccggatgggcagaatgccgacagtgcg
acggtgacctaccgggcgtgggatcagacgagcgggacagaaggcacaaaggtggatgcg
tcgaccaatggcgggacgacggcctttagcaccgcgacggatacggccagcatcacggtg
acggccgtcaacgatgcgccggtggtgacgccggcggcgccgaccttcacgacgatcacg
gaagatgacacgagcaacagcggccatctggtgtcagcgatcgtgggggcgagtatcacg
gatgtggacacgggggcggtggagggcatcgcgattaccggcctcacgagtggcaacggg
acgtgggagtatgacatcgggagcggctggacggcggtgggggcggtcagtgatgcctcg
gcattactgctccgggcgaccgacagtttgcgctttgtgccggacgggcagaatgctgac
agtgcgaccgtgacgtaccgggcgtgggatcagacgagcgggacggaagggacgaaggtg
gatgcctcgacgaacggggggacgaccgcgtttagtaccgcgacggatacggccagtatc
acggtgacagcggtgaacgatgcgccggtgctgacgccggccagtcccacgctgacgacc
atcacggaggatgacacgagcaatagtggcgacctggtgtcagcgatcgtgggggcgagt
atcacggatgtggacacaggggcggtggagggcatcgccatcaccgccctcacgagtggc
aacggcacgtgggagtacgacatcgggggtgggtggacggcggtgggggcggtcagtgat
gcctcggcgctcttgctccgtagcacggatagtctgcggtttgtcccggatgggcagaat
gcggacagtgcgacggtgacctaccgggcgtgggatcagacgagcgggacggaagggacg
aaggtggatgcctcgaccaacgggggcacgacggccttctcgaccgcgacggatacggcc
acgattacggtgacggcggtcaatgacgcgccggtgttgacgccggcgagtcccacgctc
accaccatcaccgaagatgacacgagcaacagcggcgacctggtgtcggccatcgtgggc
agctcgattgccgatgtggacagtggggcggtggaaggcatcgccatcacgggcctcacg
agcggcaacgggacgtgggagtacgacatcgggggcggctggacggcggtgggggcggtc
agtgatgcctcggccctcttactgcgtagtaccgatagcttacggtttgtgccggatggg
ttgaatgcggacagtgcgacggtgacctaccgggcctgggatcagacgagcgggacggaa
ggcacgaaggtggatgcgagtacgaacgggggcacgacggccttctcgacggcgacggat
acggccagcatcacggtgacagcggtgaacgatgcgccggtggtgaccccggcggcgccg
accctcacgaccatcacggaagatgagaccagcaacagcggccatctggtgtcagcgatc
gtgggggcgagtatcacggatgtggacacgggggcggtcgagggcatcgccatcacgggc
ctcacgagtggcaacggcacatggcagtatgacatcgggagcggctggacggcggtgggc
gcggtcagtgatgcctcggccctgctcttgcgcagcaccgatagtctgcggtttgtgccg
gacgggcagaatgcggacagtgcgacggtgacctaccgggcgtgggatcagacgagcggg
acagaaggaacaaaggtggatgcgtcgaccaatggcgggacgacggccttctcgacggcg
acggatacggccagtatcacggtgacggcggtcaacgatgccccggtgctgacaccggcg
gcgccgaccctcacgaccatcaccgaagatcagaccaataacagtggtgacctggtgtcg
gcgatcgtgggggcgagtatcacggatgtggacacgggggcggtggagggcatcgcgatc
acgggcctgacgagtggcaacggcacgtgggagtacgacatcgggggcggctggacggcg
gtgggggcggtcagtgatgcctcggcgctcttgctccgtagcacggatagtctgcggttt
gtgccggacggcttgaatgcggacagtgcgacggtgacctaccgggcgtgggatcagacc
agcgggacggaagggacgaaggtggatgcgagtacgaacggggggacgacagcctttagc
accgcgacggatacggccagcatcacggtgacggcggtcaacgatgcgccggtggtgaca
ccggcggcgccgactctcacgaccatcacggaagatgagaccagcaacagcggccatctg
gtgtcagcgatcgtggggagttcgattgccgatgtggacacgggggcggtggagggcatc
gcgatcacgggtctcacgagtggcaacggcacgtgggagtacgacatcgggggcgggtgg
acggcggtgggggcggtcagtgatgcctcggcgctcttgctccgtagcacggatagtctc
cggtttgtgccggacgggcagaatgcggacagtgcgacggtgacctaccgggcgtgggat
cagaccagcgggacggaaggcacgaaggtagatgcgagtacgaacggggggacgacggcc
ttctcgacggcgacggatacggcgagcatcacggtgacggcggtcaacgatgccccggtg
gtgacgccggcggcgccgagtctcacgaccatcacggaagatcagaccaataatagcggc
gacctggtgtcggccattgtgggcagttcgattgccgatgtggacacgggggcggtggag
ggtatcgcgatcacgggtctcacgagtggcaacgggacgtgggagtatgacatcgggagc
ggctggacggcggtgggggcggtcagtgatgcctcggcattactgatccgggcgaccgac
agtctgcgctttgtgccggatggcttgaatgcggacagtgcgacggtgacgtaccgggcg
tgggatcagacgagcgggacagaaggcacgaaggtggatgtctcgagcaatgggggcacg
acggccttctcgacggcgacggatacggcgacgattacggtgacggcggtcaatgatgcc
ccagtgctgacgccggccagtcccacgctcaccaccatcaccgaagatcagaccaataat
agcggcgacctggtctcggccatcgtggggagctccattgccgatgtggacacgggggcg
gtggagggcatcgccatcacgggcctcaccagtggcaatggtacgtgggagtatgacatt
ggcggcgggtggacggcggtgggggcggtcagtgatgcctcggccctcctgctgagggcg
accgacagtttgcggtttgtgccggatgggcagaatgcggacagtgcgacggtgacctac
cgggcgtgggatcagacgagcgggacggaagggacgaaggtggatgcctcgacgaacggg
gggaccaccgcgtttagtaccgcgacggatacggccagtatcacggtgacagcggtgaac
gatgcaccggtcatcaccagtaatggtggcggtcccacggctgcagtgaatgcggtggag
aatcaaacgagtgtcaccacggttacggccactgatgttgatttaccggcagatacgctg
accttcactatcattggcggagcggatgcgagtctgttttccattagcagcggtacgggg
gtcttggcctttaatacggctcacgactttgaatcaccagcagatgctgatggcaataat
gtctatgaggtgaccgtccaggtgagtgatggtaatggcggtgtggatacgcaagccatc
tccgtgacggtgaccgatgacaatgatgtgccgataatcacgagtaatgggggcggcccc
acggcggtaatgaatacggcagagaatcaaacgtatgttacgacggtgacggccacggat
gtagatatgccggcaaatccgttgacctatacgatattaggcggggcggatgcggcgtta
ttcaccattgatccgaccaccggggtgttgaccttcaccgtgcccccggactttgagaca
cccaccgatgccgatgcgaataatatttatgaggtggtggtacaggtgagcgatggtaac
gggggtgtggattctcaaatgattcaggtgaccgtcacagatatccaggaaggcatgccc
caaacgccctcgccgcaaccagatcccacgcccacgcctgcgccaagccctcgtccaact
ccggaggcgccgcttgataccaatacttcgcctccaggaacacccccgatcgggtttccg
gattcattcggtggtcaacctccagcgggacgggatcttacccgacatcctgatccacag
tcagttcctgactggaatagggtcttggaggtcgccccatttctgcgtccaggcactttt
ggaaccacctcagaacaaattcgtgcctatactccggccccagtgctgctttccagcatc
gagctgagccaggaattccttcagcagctgaactcttttgccgatgatttgaaagagacc
acccaacaaaccattgaggaacggtcctttttcatcaagatgatggaatacacggggctg
ggcgtatcgggagtccttctggcgtggctggtgagaagtggcacgctcctggcgagcgta
ttggcgacgctcccggcctggcggaactttgaccctattgccattctggatatggatcaa
aagagccgggaaagtttgacgaagaaaatgaaggaagccgcagagaaggagacccgggag
catcacggattggatcggatgttggacaagaatagtgatcaatcggttcgcccttcctcc
acgttttcctccggatcctcatga
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