Candidatus Nitrospira neomarina: PQG83_10555
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Entry
PQG83_10555 CDS
T09428
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
nneo
Candidatus Nitrospira neomarina
Pathway
nneo03030
DNA replication
nneo03430
Mismatch repair
nneo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nneo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PQG83_10555 (dnaE)
03430 Mismatch repair
PQG83_10555 (dnaE)
03440 Homologous recombination
PQG83_10555 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nneo03032
]
PQG83_10555 (dnaE)
03400 DNA repair and recombination proteins [BR:
nneo03400
]
PQG83_10555 (dnaE)
Enzymes [BR:
nneo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PQG83_10555 (dnaE)
DNA replication proteins [BR:
nneo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PQG83_10555 (dnaE)
DNA repair and recombination proteins [BR:
nneo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PQG83_10555 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
WNM60205
UniProt:
A0AA96GH70
LinkDB
All DBs
Position
2430872..2434336
Genome browser
AA seq
1154 aa
AA seq
DB search
MPAQFVHLHLHTQYSLLDGANQLTPLFQQVKNFGMPAVAMTDHGNLFGAIDFYQKAKAHD
VKPIIGCEAYMAPGHRTQRAGHLAHNEYFHLILLATNQVGYHNLIKLSSKAYLEGFYYKP
RMDKELLQEHQEGLIALSGCLSGEVPQLINHQDMEGALRVADEYRSIFGKDRYYLEVQAN
GLDHQLVANRGLLEIHEKLGIPLVGTNDCHYLNKRDARPHEIMLCLQTGKTLKDPNRMKF
DTDQLYVKSTEEMIAEFAEFNRAVLNTTQVAEQCDLQLEFGTSYLPDYHVPEGQTHNSYL
KHLAEEGLRSRLRERPTGIPSEAYQQRLHTELAVLNAMGYAGYFLVVWDIINFARSRNIP
VGPGRGSAAGSLVAYALRITDLDPLTYNLLFERFLNPERVTMPDIDMDFCMDRRGEVINY
VIEKYGEAHVCQIITFGTLGAKAAIRDVGRVMDFPYAEVDRVAKLVPTQLNITLQDALKQ
EPRLQELVDQDAKMKELMDTAMALEGLARHASTHAAGVVISQKPLMDHVPLYKTSNDEIV
TQYTMTDLEKVGLVKFDFLGLKTLTMIHDAVRMVNAQHPDEPPLDINNLPLDDLQTFELL
SSGKTSGIFQLESSGMRNLLVKIKPETFEDLIAILALYRPGPLESGMVDDFIKRKRDASQ
IVYDPPQLEPILKETYGVIVYQEQVMAVANQLAGFSLGQADLLRRAMGKKKHEEMAKQKE
LFVSGAKGKGISEKLSEKLFDQMAFFAGYGFNKSHSAAYAVVTYQTAYLKAHFPTEFMAA
LLTSEMGNTDKMVGYFTECRELGVHILPPDANQSLKNFSVVPEGIRFGLVAIKNVGGNAV
DVILESRDREGPFSSFIDFCCRMDSQKVNKRVLEGLIKVGAFDSMGFTRASMFKVLDEAL
EHASTVQRNKREGQTSLFEILAPEPAAPKQEGFGFAIPQIPEWSQNDLLKYERELTGFYI
TAHPLNRHSVGITHFSTCSTQTIRDVGDGREVKVCGVISSLKITTTKKGHRMAYAQLEDL
HGTVEAIIFPETFKQHEELLGPESVVRITGTVDLMDNGARIKATKVESLSQLENETVKHV
TLKVHEQDVTPHNLLDLKEIFERHRGPTPISLAFHLHPNLTASMSGLSDIGISPSPEFLE
EVEHLLGTSTVTFQ
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
gtgccggcacaattcgttcatcttcatcttcacacccagtatagtctcctcgacggggcc
aaccaactcacacccctgttccaacaggtgaagaattttggtatgcccgccgtcgccatg
accgaccatggcaatctcttcggcgccattgatttttatcaaaaagccaaagcgcatgat
gtcaagccgattatcgggtgtgaagcctatatggctcccggccaccgcacgcagcgggca
ggacaccttgcgcataacgaatatttccatctgattcttcttgccacgaatcaagtcggc
tatcacaacctcattaaactctccagcaaggcctatcttgaaggcttttattacaagcct
cgcatggacaaggaattattacaggaacatcaggaaggtctaattgccctgtcaggttgt
ttgagcggagaggtgccacagctcattaaccaccaggatatggaaggggcgctgcgggtg
gcagatgagtatcggtcaatctttggaaaggaccgctattacctggaagttcaggctaac
gggttggatcatcaacttgttgcgaatcgagggttactggagattcatgaaaagcttggc
attccgctggtcggcaccaacgattgccattatctcaataaacgagatgcgcgtccccat
gaaatcatgttgtgccttcaaacgggaaaaacgcttaaagatcccaaccggatgaaattt
gataccgatcagttatatgtgaaatccactgaagaaatgatcgcggaatttgcggaattt
aaccgcgcggtcttaaatactactcaggtggccgaacagtgcgatcttcaattggagttc
ggaacctcctatctgccggattatcacgttcctgaaggacagactcataactcctacctt
aagcaccttgcggaagaaggccttcgaagccgtttacgagaacgcccaacgggcattcca
tccgaagcctatcaacagcgacttcacactgaactcgctgtgctgaatgccatggggtat
gccggatattttttggttgtgtgggatatcatcaatttcgccaggtcccgcaacattccg
gtcggccccgggcgaggatcggccgccggaagccttgtggcgtacgccctgcgaattacg
gacctcgatcccctcacctacaacctgctctttgaacgcttcctcaaccccgaacgtgtc
accatgccggatatcgacatggacttttgcatggaccgccgtggcgaagtgatcaactat
gtcattgagaaatacggagaggcgcatgtatgccagatcattacctttggcacactaggg
gccaaagcggccatccgggatgtggggagagtgatggactttccctatgccgaagttgac
cgggtcgcgaagttggttcccacccaactcaacatcactctccaggatgccctgaaacag
gaaccacgcctgcaggaacttgtcgatcaagatgccaaaatgaaggaactcatggatacg
gccatggccctggaaggcctggcgcgacatgcctcgactcatgcggcaggcgtggtcatt
tcacaaaaacccctcatggatcatgtgcccctctacaaaacaagtaacgacgaaatcgtg
acccaatacacgatgaccgatctggaaaaagtcgggttggtgaaattcgattttctgggg
ctcaaaaccctgaccatgattcatgacgcagttcggatggtcaatgctcaacatcctgat
gagccgccattggacatcaacaatctgcccttggatgatctccagacgtttgagctgctc
agctctggaaaaacttcagggattttccaactggaaagttccggcatgcgaaacctgttg
gttaaaatcaagccggaaacgtttgaagatctgatcgctatcctcgcgctctatcgtccc
ggccccttagaaagcggcatggtggatgattttattaaacgaaaacgcgacgcctcccaa
attgtctatgaccctccgcaattggaacccattctcaaagaaacttatggggtgatcgtc
taccaggaacaggtcatggccgtcgccaaccagttggcaggattttcattgggacaagcc
gatttacttcggcgggcgatgggcaagaaaaaacatgaggaaatggccaaacaaaaagaa
ttgtttgtctcgggcgccaaagggaagggaatttcggaaaaactctccgaaaaattattt
gaccaaatggcctttttcgcaggctacggatttaacaagtctcactccgctgcctatgcg
gtcgtgacataccaaacggcttacctgaaagcccattttcccactgaatttatggccgct
ctgctgacatctgaaatgggaaataccgacaaaatggtcggctattttaccgaatgccgt
gaattgggggtacacattctgccccccgatgccaaccaaagcttaaaaaacttcagtgtc
gtgcctgagggtatccggttcgggttagtggcaatcaagaacgtcggtggaaacgccgtg
gacgtgattttagaatcacgagacagggaaggcccgttttcatcctttattgatttttgt
tgccgcatggattcgcaaaaggtcaacaaacgggtgctggaaggactcatcaaggtcgga
gcctttgattccatgggtttcacgcgcgccagcatgtttaaggtcctggatgaagccttg
gagcatgcctcgacggtccaacgcaacaaacgggaagggcaaaccagtttgtttgaaata
ctggctccggagccggcagcccccaagcaggaaggttttggtttcgccattccacagatt
cccgagtggtcgcagaatgacttacttaaatatgaacgggagctgaccggcttttatatc
accgcgcatcctctcaaccgtcacagcgttggtatcactcatttttctacctgctccacc
cagaccattcgcgacgtcggcgacggccgagaggtcaaagtttgcggcgtcatttccagt
ctcaaaattacaacgacgaaaaaaggccataggatggcttatgcccaattggaagatttg
cacggaaccgttgaagcgattattttccctgagacctttaagcaacacgaagaattattg
gggccggaatcggtggttcgaattaccgggaccgtcgatctcatggataatggcgcccga
atcaaagccaccaaagtcgaatcgctctctcaattagaaaatgaaacggtgaagcacgtg
acccttaaggtccacgaacaggacgttaccccccacaatctgctagacttaaaggaaata
ttcgaacgccaccgcggtccgacccctatttcgttggcgtttcacttgcatcctaacttg
acggccagcatgtcaggattatcggacattggcatttctccgtccccggagtttttagaa
gaagtggaacatctcctcggcacatccacggtcaccttccaataa
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