Candidatus Nitrospira neomarina: PQG83_12460
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Entry
PQG83_12460 CDS
T09428
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
nneo
Candidatus Nitrospira neomarina
Pathway
nneo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nneo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PQG83_12460 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nneo03019
]
PQG83_12460 (pnp)
03016 Transfer RNA biogenesis [BR:
nneo03016
]
PQG83_12460 (pnp)
Enzymes [BR:
nneo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PQG83_12460 (pnp)
Messenger RNA biogenesis [BR:
nneo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PQG83_12460 (pnp)
Transfer RNA biogenesis [BR:
nneo03016
]
Prokaryotic type
tRNA degradation factors
PQG83_12460 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
S1_RRP5
DUF1904
Motif
Other DBs
NCBI-ProteinID:
WNM60572
UniProt:
A0AA96GGJ4
LinkDB
All DBs
Position
complement(2894381..2896486)
Genome browser
AA seq
701 aa
AA seq
DB search
MIHFVEMEVGGRPLRLETGRLAKQADGAVLATYADTVVLATAVASKTLKADADFLPLTVN
YQEKAYSAGKIPGGFFKREGAPSEKEVLTSRLIDRPIRPLMPDGYFYETQIIVSVLSIDQ
TMSSDVIGIVAASAALAVSDIPGSGLLAGVRIGRVNGQFVVNPDKKAQEESELNLVVAGT
KDAVMMVEAGADGLSEDTMIDAIELAHREIKNIVAKIEELQAKAGKAKRVLQVEAIDAEI
EQAVRQVAAAPICEAMYIAAKAERQDRFAQILQEAIETVAGDDADRKAKVKKVFADLEYS
EVRRMILEKKKRADGRGLSDIRPISSEAGILPRTHGSALFTRGETQALAVVTLGTSDDEQ
RIDALEGEYFRSFMLHYNFPPFSVGEAKMLRGPGRREVGHGKLAERALAAVLPTKEEFPY
TIRLVSDILESNGSSSMATICGGALAMMDAGVPIKTPVAGIAMGLILEQGGVAILSDILG
MEDHLGDMDFKVAGTRDGVTALQMDIKIAGITPDLMRQALAQAREGRLHILGKMDECLAV
PRTGLAAYAPRITTIQIKQDKIRDLIGPGGKMIRSIIADCGVKVNVDDSGVVTIAAVDGE
SAQKAMDMVQRIVEEAEVGKIYLGTVRKIVDFGAFVEILPGMDGLVHISQLAPHRVASVT
DEISEGEQILVKVLEIDRQGKIRLSRKDAMAEQTDKDQLTS
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgattcatttcgttgaaatggaagttggtggtcgcccgcttcgtttggaaactggtcgc
ctggcaaagcaggcggatggtgccgtgttggccacctatgccgataccgtggtgctcgcc
acggcggtagcctcaaagactttgaaggctgacgccgatttcctgcctctgaccgtcaac
tatcaagaaaaagcctactcagctgggaaaatacctggtggatttttcaagcgggaaggg
gcgcccagcgaaaaagaggtgttaaccagccgactcattgaccgtccgattcggccttta
atgccggacggttacttttatgaaacccagatcattgtatcagtgctttctattgatcag
accatgtcctcggacgtcatcggcattgtggccgcgtcagcagcactcgccgtatccgat
attcccgggtccgggttattagcaggggtacgaattggaagagtgaacggccaatttgtg
gtcaatcccgataagaaggcacaggaggaaagcgagttaaatctcgtggtggccggaacg
aaggacgctgtgatgatggtcgaggctggtgcggatgggctttcggaagacacgatgatt
gatgcgatcgaattggctcatcgtgaaatcaagaatattgttgccaaaattgaagaatta
caagcgaaggctggcaaagccaagcgggtattgcaggtggaagccatcgacgcggaaatt
gagcaagccgtacgccaagtcgcggccgctcccatttgtgaggccatgtatattgcagcc
aaagccgaacgccaggatcggtttgcccaaattctccaagaagcgattgagaccgtggcc
ggagacgatgccgatcgaaaagcgaaggttaaaaaagtgtttgccgatttggaatattcc
gaggtccggagaatgatcctggaaaagaagaagagagccgatggacggggtctatccgac
attcgtcccatatcttctgaggcagggattcttccccggactcatggttcggcgttattt
accaggggggaaacccaggcattggctgtcgtgaccctgggcacttcagatgatgagcaa
cggattgatgcgttggaaggggagtatttccggtcatttatgttgcattacaatttcccg
ccttttagtgtgggtgaggcgaaaatgcttcgaggtccgggtcggcgggaagtcggccat
ggcaaattagccgaacgtgcgttggccgcagtgcttcccaccaaggaagagttcccctat
accattcgacttgtctcggatattttggaatcaaacgggtcctcttcaatggccacgatt
tgtggtggggcattggccatgatggatgcgggagtacccattaaaacgccggtggctgga
atcgcgatggggttaattttagaacagggtggcgtcgcaattctttcagatattttagga
atggaagatcatctgggcgatatggatttcaaagttgccggaacgcgagatggagtcaca
gcccttcagatggatattaagattgccggaataacccccgacctgatgcggcaggcgttg
gcgcaggcccgtgagggacgattgcacatccttgggaaaatggatgaatgcttggctgtt
cctcgtaccgggctggcagcctatgcgccacgtatcaccaccatccagatcaaacaagat
aaaatccgggacctcattgggcctgggggcaaaatgattcgtagcatcattgccgattgt
ggagtgaaagtgaatgtcgatgactcaggagtggtgacgattgcagccgtagacggggag
tcggcccaaaaggcaatggatatggttcagcggatcgttgaagaagcggaggttgggaaa
atctatctcggaacggtgcgaaagattgtagattttggcgcctttgtggagattcttccc
ggtatggatgggcttgtgcacatttcgcaattggccccgcaccgtgtggcatcggttacg
gacgaaatttccgaaggggaacagattctggtgaaagttctggaaattgatcgacaaggg
aaaatccgtcttagccgaaaagacgccatggctgaacagacggataaggatcagctcacc
tcttaa
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