Candidatus Nitrospira neomarina: PQG83_13655
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Entry
PQG83_13655 CDS
T09428
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nneo
Candidatus Nitrospira neomarina
Pathway
nneo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nneo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PQG83_13655 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nneo03019
]
PQG83_13655 (recQ)
03400 DNA repair and recombination proteins [BR:
nneo03400
]
PQG83_13655 (recQ)
Enzymes [BR:
nneo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PQG83_13655 (recQ)
Messenger RNA biogenesis [BR:
nneo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PQG83_13655 (recQ)
DNA repair and recombination proteins [BR:
nneo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PQG83_13655 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
WNM60801
UniProt:
A0AA96GFJ3
LinkDB
All DBs
Position
3186618..3188918
Genome browser
AA seq
766 aa
AA seq
DB search
MKNNLSPQQTNSRHLSPSTQSHLLSLLKEHFGFTAFRPLQEEIIRDVLAKRDVVALLPTG
GGKSLCFQLPALARSGLTIVVSPLIALMKDQVDGLRANGIAATYLNSSLTAQESQARLRG
LHQGDYRLLYMAPERLMVPGYLSLVRNFQVNLLAIDEAHCISEWGHDFRPEYRRLVELRD
QAPSLPIIALTATATERVQKDIVTLLRLQDPACYVASFNRPNLTYHVQPKDNPFGQVLAF
LRKRHKDSGILYCQSRNTTESVADRLQQNGLKALPYHAGLSAEERTRHQELFLRDEIQVI
CATIAFGMGINKPNVRFVIHYDLPKNLESYYQETGRAGRDGLPSECVLLFSAGDTVKQQR
FINEKTNFQEQQIANRQLQEMVHYAECGTCRRRTLLQYFGEQVESENCGGCDNCLSPRDT
FDGTDAAQTVLSCVEEIRGTSGFSVGLNHVIAVLTGANTEKIRRWRHDHLTSYGKGEGHR
RPEWAAISRELIRLGYLQQTVDPFTVLEVTDQGQHFLQDPKTLMLTKPMSTPERKALSVE
DLGHDEMLFTRLRQLRKTLADEGDVPAYVIFSDVALRQMARDYPTNEQEFLQISGVGNRK
LQEFGPKFLAVIAAHLENYAPLSIPKESNPPSTPSLRNQNPANNQRGVGCRQDLEVNEET
AIKKKPLGDTVHQTLRYFRSGHSIEQIASERGLVTSTIYGHLEQAIQAGEPVDLTQLWTS
EQELEMAEAFMKTGFGNLTGAKELLGNLYDYGQLRLFRAVHGKKWQ
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
gtgaagaacaacctatcccctcaacagaccaactcccggcacctgtccccctcaacacaa
tctcacctcctctctctgttaaaagaacattttggtttcacggcctttcggcctttacaa
gaagagatcattcgggatgtcctcgctaagcgcgacgtggtggccctgttgcccacggga
ggagggaaatccctgtgctttcagttaccggcgctggcccgctcgggcctgacgatcgtt
gtctcgccgctcattgcgctgatgaaagatcaagtggatgggctccgtgccaatggcatt
gctgcaacatatctcaactcatctctgaccgcgcaggaatcccaggcacggttacggggg
ctgcatcagggtgactatcgcctgctctacatggcgccggaacgcctcatggtccccgga
tacctcagcctggtccggaattttcaggtcaatctgctggccattgatgaagcccactgt
atcagtgaatggggccatgatttccggccggaataccggcgacttgtggaactccgagat
caggccccgagtctcccgatcatcgcactcaccgccaccgccacggagcgggtgcaaaaa
gacatcgtcacacttctacgattgcaggatccggcctgctacgtggccagtttcaaccgt
cccaatctgacctaccatgtgcagcctaaggacaacccgtttggacaagtcctcgccttt
ctccggaaacgccacaaggactcaggaattctttactgccagagccggaataccacggaa
agtgtggcggatcgtttacagcaaaatgggctgaaggcgctgccctatcatgccggcctg
agtgccgaagaacgtacacgtcatcaggaattgttcctgcgagatgaaatccaggtgatt
tgcgccaccattgccttcggcatgggaatcaacaagcctaacgtgcgatttgtcattcac
tacgatttaccaaaaaacctcgaaagttattatcaggagaccggccgcgccgggcgcgat
ggtttgccaagcgagtgtgtcctgctcttcagcgccggggatacggtcaagcagcagcgc
tttatcaatgagaaaaccaacttccaggaacagcagattgccaacaggcaattacaggaa
atggtgcactatgcggaatgcggcacatgccgacgtcgcaccttgctccaatattttgga
gaacaggttgaatcagaaaactgtggcggatgcgacaactgtctctcgcccagagatacc
ttcgacggcacagatgccgcacagaccgtgctctcttgcgttgaagaaattcgtgggaca
agtggatttagcgtcggactcaatcacgtcatcgccgtactcacgggagccaacaccgag
aaaatccgcagatggcgtcatgaccatttaaccagctacgggaaaggggaaggccaccgg
aggcccgaatgggccgccattagccgggaactcatccggctgggatatctccagcaaacg
gtagacccattcacagtgttggaagttaccgaccagggtcagcattttcttcaagacccc
aagacgctcatgctcacaaagcccatgagcacaccggaacgcaaggcgctctctgtcgaa
gacctgggtcacgacgagatgctcttcactcgcctccgccaactacgaaagacattagcc
gatgagggtgatgtcccggcctacgtcatattctccgatgtggcactacggcagatggca
cgagactatccgaccaatgaacaggaattcctccagattagtggagtcgggaatcggaaa
ttacaggagtttggccccaagtttctggcagtcattgcggcacatctggagaattacgct
cccctgagtattcccaaggaatcgaatcccccttccacgccctctctaagaaaccagaac
ccggcgaacaatcaaagaggtgttgggtgcaggcaggatttagaagtcaatgaagaaacg
gccataaaaaaaaagccgcttggagataccgtccatcaaaccttgcgctattttcggtcg
gggcattcgatcgaacaaatcgccagtgagcgcggtttggtcaccagcaccatctatgga
cacctggaacaagccatccaagccggtgaaccggtagaccttacacaactgtggacatcg
gagcaggaattagaaatggcagaagccttcatgaaaacgggttttggcaatctcaccggc
gccaaagagctcctcggcaatctctacgattatggccaacttcggctcttccgtgccgtt
catgggaaaaagtggcaatga
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