Nipponia nippon (crested ibis): 104009120
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Entry
104009120 CDS
T05756
Symbol
COL6A2
Name
(RefSeq) collagen alpha-2(VI) chain
KO
K06238
collagen type VI alpha
Organism
nni
Nipponia nippon (crested ibis)
Pathway
nni04510
Focal adhesion
nni04512
ECM-receptor interaction
nni04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nni00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104009120 (COL6A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104009120 (COL6A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104009120 (COL6A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nni04147
]
104009120 (COL6A2)
00536 Glycosaminoglycan binding proteins [BR:
nni00536
]
104009120 (COL6A2)
Exosome [BR:
nni04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
104009120 (COL6A2)
Glycosaminoglycan binding proteins [BR:
nni00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104009120 (COL6A2)
Hyaluronan
Extracellular matrix or blood plasma proteins
104009120 (COL6A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
104009120
NCBI-ProteinID:
XP_009459346
LinkDB
All DBs
Position
Unknown
AA seq
1019 aa
AA seq
DB search
MFREALFSTLLCVALVPLHAQFDGDPGDVSPTSCAEKRNCPINVYFIIDTSESVALQTVP
IQSLVDQIKQFIPIFIDKLENELYQNQVYITWQFGGLHYSDVVEIYSPLTSSKDIYLPRL
SAINYLGRGTFTDCAISNMTEQIQTQMATGVNFAVVITDGHVTGSPCGGMKMQAERARDM
GIKLFAVAPSENVYEQGLREIANLPHELYRNNYAITQKDTLDIDVNTTERIIQAMKHEAY
GECYKMSCLEIAGPPGPKGYRGQKGAKGNMGEPGSPGLKGRQGDPGIEGPIGYPGPKGVP
GLKGEKGEIGSDGRRGAAGLAGRNGTDGQKGKLGRIGPPGCKGDRGDKGPDGYPGDAGDQ
GERGDEGIKGDPGRPGRSGPLGPPGEKGSPGLPGNPGAQGPAGTKGRKGETGPPGPKGEP
GRRGDPGTKGSKGTPGTKGERGDPGPEGPRGLPGEVGSKGARGDQGLPGPRGPPGAVGEP
GNIGSRGDPGDLGPRGDIGPPGLKGDRGRPGFSYPGPRGPQGDKGEKGQPGPKGGRGELG
PKGVQGTKGEKGEPGDPGPGGEPGPRGPTGEAGPEGTPGPPGDPGLTDCDVMTYVRETCG
CCDCEKRCGALDIMFVIDSSESIGYTNFTLEKNFVVNVVSRLGSIAKDPKSQTGARVGVV
QYSHDGTFEAISLDDERIDSLSSFKEAVKRLEWIAGGTWTPSALQFAYNKLIKESRREKA
QVFAVVITDGRYDPRDDDKNLGALCGRDVVVNTIGIGDMFDQPEQSETLVSIACNEPQRV
QKMRLFSDLVAEEFIDKMEDVLCPDPQIICPELPCQTELAVAQCTQRPVDVVFLLDGSER
IGEQNFHRAHHFVEEVARQLTLARSNSDNMNARIALLQYGSERDQDVVFPLTYNLTEISN
ALAQIKYLDSSSNIGSAIIHAINNIVLSPGDGQRLARRNAELSFVFITDGITGSKNLEEA
INSMKKQDVMPTVVALGSDIDMDVLLKLGLGDRAAIFREKDYDSLSQPSFFDRFIRWIC
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgttccgagaagccttgttttccactcttctttgtgtggctctagttcctctccatgct
cagtttgatggggatcctggagatgtcagtcctacctcctgtgcagaaaagaggaactgc
cccatcaatgtgtacttcatcattgacacctcggagagtgttgctctgcagactgtgcct
atccagagcctcgtggatcaaataaagcagttcatccctatattcattgataaactggag
aatgagctctaccagaaccaagtctacatcacttggcagtttggtggacttcattactct
gatgtggtggaaatttacagccctttaacaagcagcaaagacatatacctccccaggctg
tccgctattaactaccttggccggggcaccttcacagactgcgctatctccaacatgaca
gagcagatccagacccagatggccacgggtgtgaactttgcagtagtcatcactgatggc
catgtcactggcagcccctgcggggggatgaagatgcaggctgagagggcacgagacatg
gggatcaagctcttcgcagtggcccccagtgagaacgtctatgagcagggactgcgggag
attgccaatctgccgcatgagctgtaccgcaacaactacgccatcacacagaaagacacc
ctggacattgacgtgaacaccaccgagaggataatccaagctatgaaacatgaagcctac
ggagagtgctacaagatgagctgtctggagattgcaggtccacctggtcccaagggatac
cgagggcagaagggtgccaaggggaacatgggtgaaccaggctcccctgggctgaaggga
cgacagggtgacccaggtattgaaggtccgatcgggtaccctggtcccaagggtgtccca
gggctgaaaggagagaagggtgagatcggatccgatggacggaggggcgccgctggtttg
gcaggcaggaacggcaccgatggacagaagggcaagctggggagaattggaccaccaggt
tgcaagggagaccgtggtgacaagggccctgatggctacccaggagatgcaggagaccaa
ggtgaaagaggagatgaaggcataaagggagatcctggccggcctggtcgcagcggaccc
ctgggacctccaggagaaaaaggaagcccgggacttccaggcaaccctggagctcaaggc
cccgctggaactaagggaagaaaaggtgaaacgggacctcctggacccaaaggagagcct
ggtcggcgtggagatccagggacgaaaggcagcaaaggcactcctgggactaaaggagaa
aggggagatcctggtccagagggtcctcgtggcctgcctggtgaggttggaagcaaagga
gcaaggggagaccaaggactgccaggaccccgaggccctccaggtgctgtgggagagcca
ggcaatatcggatcacgtggagaccctggtgacttgggcccaagaggtgacatcggacca
ccaggactgaagggcgacagaggcagacctggctttagctaccctggacccagaggacca
cagggtgacaagggtgagaaggggcagccaggacccaagggaggaagaggagagcttgga
ccaaaaggagtgcaagggaccaaaggagagaagggggaaccgggtgatcctggcccagga
ggtgagcccggaccccgcggtccaactggtgaagcaggcccggagggaaccccgggccca
ccaggagatcctggcctgactgactgcgatgtgatgacctacgtgcgagagacgtgcgga
tgctgtgactgcgagaagcgctgtggtgccctggacatcatgtttgtcatagacagctcg
gagagtattggctacaccaacttcaccctggagaagaactttgttgtcaacgtggtcagc
aggctgggctctattgccaaggaccctaagtcacagacaggtgcccgtgttggggtggtg
cagtacagtcacgacgggaccttcgaagccatcagtcttgatgatgagcgcattgattca
ctgtcaagcttcaaggaagcagtgaagcgcctggaatggatcgctggaggcacctggaca
ccatctgcccttcagtttgcctataacaagctcatcaaggaaagcaggcgagagaaagcc
caagtgtttgctgtggtgatcacagatgggcgctatgacccccgggatgatgacaagaac
ctaggggctctttgcggtagagatgtggtcgtcaacactattggcattggagacatgttt
gatcagccagaacagagcgagaccctggtctccatcgcctgcaatgaaccccagcgagtc
cagaagatgagactcttctcagacctggtggcagaggaattcattgacaagatggaggac
gtactctgcccagatccacagatcatctgccctgagctgccctgtcagacagagcttgca
gtggcccaatgcacacagcgccctgttgacgtcgtcttcttgctcgatggctctgaaagg
attggggagcagaatttccacagggcccaccactttgtggaggaggtggcccgacagctc
acactggccaggagcaacagcgacaacatgaatgcccggattgcactgctgcagtacggc
agtgagagggaccaggatgtggtcttcccactgacctacaacctgacagaaatctccaat
gccctggcacagatcaagtacctggactcatcctccaacattgggtcagccatcatacac
gccatcaacaacatcgtgctcagcccgggagatgggcagcgactcgcccggcgcaatgct
gagctctcctttgtcttcattactgacggcatcacaggaagcaagaacctcgaggaggcc
atcaactccatgaagaagcaagatgtcatgcccacagtagtggctcttgggagtgacata
gacatggacgtcctgctgaagcttggcctcggggaccgagcagccatcttccgggagaag
gactatgacagcctctcccagcccagcttcttcgacaggttcattaggtggatatgttaa
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