Nipponia nippon (crested ibis): 104009122
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Entry
104009122 CDS
T05756
Symbol
COL6A1
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
nni
Nipponia nippon (crested ibis)
Pathway
nni04510
Focal adhesion
nni04512
ECM-receptor interaction
nni04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nni00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104009122 (COL6A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104009122 (COL6A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104009122 (COL6A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nni04147
]
104009122 (COL6A1)
00536 Glycosaminoglycan binding proteins [BR:
nni00536
]
104009122 (COL6A1)
Exosome [BR:
nni04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
104009122 (COL6A1)
Glycosaminoglycan binding proteins [BR:
nni00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104009122 (COL6A1)
Hyaluronan
Extracellular matrix or blood plasma proteins
104009122 (COL6A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
DUF1194
VWA_3
vWA-TerF-like
Piwi
DUF5507
Motif
Other DBs
NCBI-GeneID:
104009122
NCBI-ProteinID:
XP_009459347
LinkDB
All DBs
Position
Unknown
AA seq
1020 aa
AA seq
DB search
MRLQEFLFTLLLPAGFLGGGSWAQRPEITTQVASAEDCPVDLFFVLDTSESVALRVKPFG
DLVAQVKDFTNRFIDKLTNRYYRCDRNLVWNAGALHYSDEVVLIKSLTSMPSGRNELKNR
VSAVNYIGKGTYTDCAIKRGIEELLISGSHHKENKYLIVVTDGHPLEGYKEPCGGLDDAA
NEAKHLGIKVFSVAISPNHLDQRLNIIATDHAYRRLPAPSPRLTRPSQTPSLCFLVLQKV
NTEQSCCSFECQPPRGPPGPPGDPGNEGERGKPGLPGEKGEAGDPGRPGDMGPVGYQGMK
GDKGSRGEKGSRGAKGAKGEKGRRGIDGIDGMKGEAGYPGLPGCKGSPGFDGAQGPPGPK
GDPGAYGPKGGKGEPGDDGKPGRQGIPGSPGEKGAPGNQGEPGPAGETGDEGAPGADGPP
GERGSNGERGPPGSPGDRGPRGEPGEPGPPGDQGREGPLGPPGDQGEAGPPGPKGYRGDD
GPRGNEGPKGFPGAPGLPGDPGLMGERGEDGPPGNGTIGFTGAPGQPGDRGDPGINGTKG
YVGPKGDEGEAGDPGNDNPTPGPRGIKGAKGHRGPEGRPGPPGPVGPPGPDECEILDIIM
KMCSCCECTCGPVDLLFVLDSSESIGLQNFQIAKDFIIKVIDRLSKDERVKFEAGESRVG
VVQYSHDNTQELVAMGDANIDNIGALKQAVKNLKWIAGGTYTGEALQFTKDNLLRRFTSD
KRVAIVITDGRSDTLRDPTPLNSLCDVTPVVSLGIGDIFRKPPNPDHLNDIACLSRPTRP
GLSIQRDNYAELLDDTFLQNITSYICQEKKCPDYTCPITFTTLADITLLVDSSTSVGSKN
FETTKKFVKRLXXXXXXAGKPADDSVRVSVVQYSGRNQQKVEAQFQYNYTVIAKAIDNMQ
FINDATDINAALRYVTELYQRSSRAGAKKRVLVFSDGNSQGITARAIERAVQEAQQAGIE
IYVLAVGSQANEPNIRVLVTGKSADYDVAYGERHLFRVPDYTSLLRGVFYQTVSRKIAVD
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgcaagagtttctattcactttgctgctcccggccggcttcctgggggggggc
tcgtgggctcagcgcccagaaatcaccacccaggtcgcaagcgcagaagactgccccgtg
gacctgttcttcgtcctggacacctcagagagtgttgccctgagagtgaagccttttggg
gacctggttgcccaagtgaaagattttaccaaccggttcattgataagctgacaaacagg
tactaccgctgcgaccgcaacctggtgtggaatgccggggcgctgcactacagcgatgag
gtcgtgctcatcaagagcctcacctcgatgcccagtggacggaatgagctgaagaaccgt
gtctcagccgtgaactacatcgggaagggcacctacaccgactgtgccataaagcgaggc
atcgaggagctgctcatcagtggctcccatcacaaggagaataaatacctgattgtggtg
actgatggacaccccttggaaggttacaaggagccctgtgggggcctggacgatgctgcc
aatgaagccaaacatttggggatcaaagtgttctctgtcgccatctcccccaaccacctg
gaccagcggctcaacataattgccacggaccatgcctaccgccgtttgcccgccccctcc
cccaggctcacccgtccctctcaaacaccctctctttgctttcttgtcttgcagaaagtc
aacacagagcaatcgtgctgctccttcgagtgccagcctccccgagggccccccggacct
cctggcgacccaggcaatgagggagaaagaggcaagccaggtcttcccggtgagaaagga
gaggctggagacccaggcaggccaggggacatgggacctgttggctaccaaggaatgaag
ggtgacaaaggaagtcgaggagaaaagggctcgagaggagccaaaggagccaagggtgag
aagggcaggcgtggaatcgatggcatcgatggcatgaagggtgaagctggataccccggg
ttacctggctgcaaaggctcacccggattcgacggagctcaaggcccgccgggaccaaag
ggagatcctggtgcttacggacccaagggaggaaagggggagcctggggacgacggaaaa
cctggccgacagggaattcccggcagccctggagagaagggcgcacctggaaaccagggt
gagcctggaccagcaggagagacaggcgatgagggtgctccaggtgcagatggtcctcct
ggagaacggggcagcaatggggaaagagggcccccaggctcaccgggcgaccgcggacca
agaggagagccgggagagcctggaccacctggtgaccaagggcgggaaggacccctcgga
ccacctggcgatcagggcgaggctggacccccaggacccaagggctacaggggagatgat
ggcccccgtggcaatgagggcccaaagggatttcctggagcacctgggctgcctggagac
cctggcctgatgggagaaaggggggaggatggccctcctgggaatggcacaattggattc
acaggtgccccggggcagccaggagacagaggtgaccctggcattaatggaacgaaaggc
tatgttggtcctaaaggtgatgaaggagaagctggagaccctggcaatgataacccaacc
cctggccccagaggcatcaaaggagcgaagggccacaggggacctgaaggccgtccggga
ccaccaggacctgtggggccaccaggaccagacgaatgtgaaatcttggacatcataatg
aagatgtgctcttgctgtgagtgcacctgcggtcccgttgacctcctcttcgtgctggac
agctcagagagcattggcctgcagaacttccagattgccaaggacttcatcatcaaagtc
atcgaccgcctgagcaaggatgagcgtgtgaagtttgaagctggggagtcccgtgtgggc
gttgtgcagtacagccacgacaacacacaggagctggtggccatgggggatgccaacata
gacaacatcggggcactcaaacaggcagtcaagaacctgaaatggatagctgggggcacc
tacactggagaagccctgcagttcaccaaggacaacctgctgcggagattcacctctgac
aaacgtgttgccattgtcatcacagacggacgctccgacacgctgagggaccctaccccg
ctgaactcactgtgcgatgtcaccccagtggtttcccttgggataggcgacattttccgg
aaacctccaaatccagatcacctgaatgacattgcttgtttaagcagaccaaccaggcca
ggactgtccattcaaagggacaactacgccgagctcctggatgacaccttcttgcagaac
atcacctcgtacatctgccaagagaagaaatgtccagactacacctgcccaatcaccttc
accacgctggcagacatcacactgctggtggacagctccaccagcgtggggagcaagaac
tttgagaccaccaagaagtttgtgaagcggctnnnnnnnnnnnnnnnnnnngccggcaag
cctgccgacgactccgtgcgtgtctcagtggtgcagtacagtggcaggaaccagcagaaa
gtggaagcccagttccagtacaactacacggtcattgccaaagccattgacaacatgcag
ttcattaacgatgccacagacatcaacgccgctctgcggtacgtcacagagctgtaccag
cggtcctcccgtgctggggcaaagaagagggtgctggtgttttctgatggcaactctcaa
gggatcaccgcaagggccattgagagggctgtgcaggaagctcagcaggctggaatcgag
atctatgtgctggcagtgggcagccaagccaacgagcccaacatccgtgtcctggtcacg
gggaagagcgcagattacgatgtggcctatggggagcgccacctcttccgtgtgcctgac
tatacctctctgctgcgtggcgtcttctaccaaactgtctccaggaagatagctgttgac
tga
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