Nipponia nippon (crested ibis): 104009248 Help Entry 104009248         CDS       T05756                                  Symbol PRPF19 Name (RefSeq) pre-mRNA-processing factor 19   KO K10599   pre-mRNA-processing factor 19 [EC:2.3.2.27] Organism nni  Nipponia nippon (crested ibis) Pathway nni03040   Spliceosome nni04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:nni00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     104009248 (PRPF19)   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     104009248 (PRPF19)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:nni03041]     104009248 (PRPF19)    04121 Ubiquitin system [BR:nni04121]     104009248 (PRPF19)    03400 DNA repair and recombination proteins [BR:nni03400]     104009248 (PRPF19) Enzymes [BR:nni01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      104009248 (PRPF19) Spliceosome [BR:nni03041]  Complex B   Other components    Prp19 complex     104009248 (PRPF19)  Complex C    Prp19-CDC5 complex     104009248 (PRPF19) Ubiquitin system [BR:nni04121]  Ubiquitin ligases (E3)   U-box type E3    104009248 (PRPF19) DNA repair and recombination proteins [BR:nni03400]  Eukaryotic type   Other factors with a suspected DNA repair function    PSO4 complex     104009248 (PRPF19) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  WD40_Prp19 Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 WD40_WDHD1_1st Prp19 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_EML_2 WDR55 Beta-prop_WDR90_POC16_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st Beta-prop_EML ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_Aladin Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_HPS5 NBCH_WD40 Beta-prop_WDR41 Beta-prop_Vps41 Beta-prop_DCAF4 PEP5_VPS11_N Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_WDR19_1st U-box WD40_RFWD3 Beta-prop_Nup120_160 PROPPIN Beta-prop_SPT8 Beta-prop_ACSF4 Beta-prop_VPS8 Cytochrom_D1 Beta-prop_DCAF12 RMC1_N B-prop_COPA_B_2nd Beta-prop_WDR35_TULP_N DUF1830 zf-Nse ATG16 GP3 Cep57_MT_bd Motif Other DBs NCBI-GeneID:  104009248 NCBI-ProteinID:  XP_009459486 LinkDB All DBs Position Unknown AA seq 514 aa AA seqDB search MPPIVSGSAGTGPEPSPGDVSNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPVNNQPL SEEQLIDIKVAHPIRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHAL YQHDAACRVIARLTKEVTAAREALATLKPQAGLIVPQTVPSSQPNVAGAGESMDLGELAG MTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILAL DLCPSDTNKILTGGADKNVIVFDKSSEQILATLKGHSKKVTSVVFHPSQDLVFSASPDAT IRIWSVPNASCVQVVRAHEGSVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDE SSGCALTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYL ATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTE ILHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKF NT seq 1545 nt NT seq  +upstreamnt  +downstreamnt atgccgccaatcgtaagcggcagcgctggcaccggcccagaaccgtcgccgggagatgtt tccaacgaggtccccgagcacccctgcgtctccccggtctccaaccacgtctacgagcgg cggttgatcgagaagtacatcgcggagaacggcaccgaccccgttaacaaccagcccctc tccgaggagcagctcatcgacatcaaagtcgcccacccgatccggcccaagcctccgtct gccacaagcatcccagccatcctgaaagccctccaggatgagtgggatgccgtcatgctg cacagcttcaccctccgccagcagctgcagactacgcgccaggagctgtcccacgcgctc taccagcacgacgccgcctgccgcgtcatcgctcggctcaccaaggaggtcaccgccgcc agagaagctttggcgactctgaagccgcaggctggcctcatcgtgccccagacggtgccg tcctcccagccaaacgtggcgggagctggggagtcgatggatctgggagagcttgcgggc atgacccccgagatcatccagaagcttcaagacaaggctacggtgctgaccacggagcgt aagaagagaggcaagacggttccggaggagctggtgaagccggaggaacttagcaagtac cggcaggtcgcctcgcatgtggggctgcacagcgccagcatcccagggatccttgccttg gacctctgtccttccgacaccaacaagatcctcaccggtggggctgataaaaacgtcatc gtctttgacaagagctcggagcagatcctggcgacactcaagggacactccaagaaggtt accagtgtcgtcttccacccctctcaggacttggtgttctcagcttctcccgatgcaact atccggatctggtctgtgcccaacgcctcgtgtgtccaggtcgtccgtgcccacgagggc tctgtcacagggctgagcctccacgcgacgggtgactacctcctcagctcttctgatgac cagtactgggctttctcggatatccagacaggccgtgtcctcaccaaggtgacggatgag agctccggctgtgctctcacctgcgctcagttccacccggacgggctcatttttggaaca ggaacgatggactctcagatcaagatttgggatctgaaggaacgcaccaacgtggccaac ttcccgggacactcgggccccatcaccagcattgccttctctgagaacggctactacctg gccacggcagcggacgactcctctgtcaagctctgggacttgcgtaagctcaagaatttc aagacgttgcagctggacaataactttgaggtgaagtctctcattttcgaccagagcggt acctacctggccctgggcgggacggacgtccagatctacatctgcaagcagtggacggaa atcctccacttcacagagcacagcggcctcaccacgggagtggcttttggccaccacgcc aagttcattgcctcaacgggcatggaccggagcctgaagttctaa

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