Nipponia nippon (crested ibis): 104010665
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Entry
104010665 CDS
T05756
Symbol
VPS8
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
nni
Nipponia nippon (crested ibis)
Pathway
nni04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
nni00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
104010665 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nni04131
]
104010665 (VPS8)
Membrane trafficking [BR:
nni04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
104010665 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_VPS8_2
zf-RING_Vps41
WD40_CDC20-Fz
TPR_Vps41
zf-RING_11
Clathrin
zf_RING_Vps8_fungal
zf-RING_2
Thioredoxin
zf-RING_UBOX
WDR55
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
104010665
NCBI-ProteinID:
XP_009461091
LinkDB
All DBs
Position
Unknown
AA seq
1685 aa
AA seq
DB search
MQKAKSSTRRDLDQLEDQATRHPVLHDKKQHHQCLHLEPSDPSHGNGQVVDAFQAWCGPC
KTVVDLFRKIRNEVGSDLLHFAVQVILDRIINIHVPLMYRESLKELGLFTLEKTKGQMPS
GGLVEKAEIDISQWYTAKEQQAEVDSIDALEKYRGKCEPLFLFYAGGELIAVIRGVNAPL
LQKTILEQMAVARKVLEHGGERVVVQDRAFSKEEGDMAAFQEEQREGQIVLTPPLASWLG
EGSWKSHLAVAKRHRGSGRGAMRVDLSFISLPTTNFSPFPSCGGXRTRRSRARFPSCRRR
HGGGWPCRAAPAQGGGVSGRGFESRRGRPAIDDKEFDIPQVDTPPTLESILNETDDEEES
FILEDPFLLNIDNTDTHSYDTSSVASSDSGDRTHLKRKKKLPDSLSLHGSVIRLSLLKGI
SAQIVSAADKVDAGLPTAIAASNLIAVGTSHGLALIFDQNQALRLCLGSTAVGAQYGAIS
ALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGTAILHIKFTDDPTLAICND
SGGSVFELSFKRVMGVRTCESRCLFSGSKGEVCCIEPLHAKVELRDHPITQYSLLAMASL
TKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVQSSVNPMLAFCRGDVVHFLLVK
RDDTGAIHVTKQRQLHLHYDLINFTWINSRTAVLLDSVEKLHVIDRQTQEELETIEISEV
QLVYNSSHFKSLATGGNVSEALALVGEKACYQSISNCGGQIFYLGTKSVHVMTLRSWRER
VDHLLKQERLTDALALAWSFYEGKAKAVVGLSGDTSKRKAVIADRMVEILLHYADRTLKK
CPDQGKIQVMEQHFQDVVPVIVDYCLLLQRTDLLFNQIYDKMSENSVAKGIFLECLEPYI
LSDKLMGITAQVMKDLLLHFQDKNRLENLEACIVHMDITSLDIQQVVLLCWENHLYDAMI
YVYNSGMNDFISPMEKLFKVIAPPLNAGKSLTDEQVVMGNKLLVYISCCLAGRAYPLGDI
PEDLVPLVKNQVFEFLIRLHSTEGSVDEEVYPHVRTLLHFDTREFLNVLALTFEDFKNDK
QAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPNNTLFVNRTLFDQVLEFL
CSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIQMAEKAEFYQICEFMYERELRYDKII
GCYLRDPVRKEEVFNYIHNILSMPGYSAEEKQSVWQKALEHIEELLLLSPCKAADLVAIH
FSEQIESIITNLQDQFLLFQFLRSLLDPREGINQDLIHLPPLITEQFIELLCQYSPDQVL
ETLKVLEYCRLEETIQITQKHQLHEASSYLLEKKGDIHGAFLVMLERLQSKLLMLTQDDE
SSAELPLLENIEDTLMKTIALCQRNSHNLDQQQREALWFPLLEAMMSPQKLSGSSQCRYS
ESLKSLTMQVLNNMAAFIALPSILQRILQDPVYGKGKLGEIQGLVLGMLDTFNYEQTLLE
TTTNLLNHDLHWSLCNLRASVTRGLTPKQDYCCICLQQYKRRQETADEIIVFSCGHLYHS
LCLLSKECGMVTKGLMRWMCYKCNSSNKGGKLSENFSELKKGSGASLAQTSSESLLDPQQ
IQAFDQLCRLNRGTSRLALLTELSRGHGGEKHGLLSISHGDPATSSVFQNENFQLHLAPP
PLAEE
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaagccaaatcctcaaccaggagggaccttgaccagctggaggaccaggccacc
agacatcctgtgctgcatgacaagaagcagcaccaccaatgtctgcacctggagcccagt
gaccccagccatgggaatggacaggttgttgatgcgtttcaagcctggtgtggtccatgc
aaaacagtagtggatcttttccgaaaaataaggaatgaagttggcagtgatctcctgcat
tttgctgtgcaagtaatactagacagaatcattaacatacatgtgcctctgatgtacagg
gagagtctgaaggagctgggtttgttcaccctggagaagactaagggacagatgcctagt
gggggattagtagagaaggcagagatagacatttctcagtggtacacagcaaaagaacag
caggctgaagttgattccattgatgctctggaaaaatacagaggaaaatgcgagcctctc
tttctgttttatgcaggaggagagttaatagctgttataagaggagtgaatgcaccattg
ctgcagaagaccatcctggaacagatggcagtggcaaggaaggttttagaacatggagga
gagcgtgtggtggtacaagacagagccttctccaaagaggagggagacatggctgctttt
caggaagaacaaagggaaggccaaatagtactgacccctccccttgcctcctggcttggc
gagggctcttggaaatcccacttggctgtagctaaaaggcaccgtgggtctggaaggggt
gcaatgcgtgttgatctgtctttcatttctctacctactactaatttttccccttttcct
tcctgcggaggctaacgcacccgtcggtcccgggcccggtttcccagctgtcgtcgccgg
cacgggggcgggtggccttgccgggctgcgcctgcgcagggcgggggcgtctccggacgc
gggttcgagtcccggcggggccggcccgctattgatgacaaagaattcgacattcctcaa
gttgatacccctccaacactggagagcatcttaaatgagactgatgatgaagaggagtct
ttcattttggaggatccctttctcttgaacattgataacacggatacacactcctatgac
acatcttctgtagcaagctctgacagtggggaccggacacacttgaaaaggaagaaaaaa
ctcccagattctctctcactgcatggatcagttatacggctctcacttctgaaaggaatt
tctgcccaaatagtatctgcagcagacaaagtggatgctggcttgcccactgcaattgca
gcatcaaatctgatagcagtggggacttcccatgggttagcactgatatttgatcaaaac
caggctcttcggctgtgtttgggcagcactgctgttggggcccagtatggggctatctct
gctctcagtatcaacaatgactgttcgaggctcctgtgcggctttgcgaaaggacagatc
acaatgtgggatctggccagtgggaagctgctacgatcaataacagatgcccacccacca
ggaacagccattctgcacatcaagtttacagatgacccgacgcttgcaatttgcaatgac
agtggaggctccgtatttgaactgtcatttaagagggttatgggagtgagaacatgtgag
tctcgatgtctcttcagtggctcgaagggggaagtttgctgtattgaaccattacatgca
aaagttgagctgagagaccatcctatcacccagtattcactgctggccatggcctccctg
acaaagatactggttattggcctgaagccatctctgaaagtgtggatgacctttccctat
ggtcgtatggacccttctagtgtccctcttctggcgtggcactttgtggctgtacagagc
tctgtgaaccccatgcttgcattttgtcgaggagatgtcgttcattttcttctggtaaag
agagatgatactggtgcaatacatgtcactaagcagaggcagcttcatctacactatgac
ctcatcaactttacttggataaactcacggacagcagtgcttctggacagtgtggagaag
ctgcacgttatagatcgtcagacacaggaggagctggaaaccatagagatctcagaagtt
caactagtctacaacagcagccatttcaaatcgctggctacgggaggcaatgtcagtgaa
gccctggcattggttggagagaaagcttgttatcagtccatcagcaactgcggtggtcag
atcttttaccttggaactaagtctgttcacgtcatgacattgagaagctggagagagaga
gttgaccaccttctgaaacaagagcgtctcactgatgccctggctctagcctggtctttt
tacgaaggtaaagcaaaggctgtagtaggcttgtctggggacacaagcaagcggaaagca
gtcattgcagacagaatggttgaaattcttctccattatgctgatcggactttgaagaaa
tgtcctgaccaaggaaaaatccaggttatggagcaacattttcaggacgtggtgcctgtc
atagttgattactgtctcttactccagcgcacggacctattatttaaccagatatatgat
aaaatgagtgagaattctgtagctaaaggcatctttctggagtgcttggagccatatatc
ttaagtgataagctgatgggaatcacagctcaagtgatgaaagacttgctgcttcacttc
caagacaagaacaggttggaaaatttggaagcctgcattgtacatatggatatcaccagc
ttagacatacagcaggtagttcttttatgctgggaaaaccatctctatgatgccatgatc
tacgtctacaacagtgggatgaatgacttcattagtcccatggagaagctgttcaaagtc
attgctcctccactgaatgctgggaagtctctcacagatgagcaggtggtaatgggcaac
aagctgcttgtatatataagctgctgcttggcaggccgtgcatatccattgggcgatatt
cctgaagatctggtacctttggttaaaaatcaggtctttgaatttctcatccggctacat
tcaactgagggatctgtggatgaagaggtctaccctcatgttcgtaccttgctgcacttt
gacactcgggaattccttaatgtccttgctctgacttttgaagactttaagaatgacaag
caagctgtggaatatcaacagagaattgtggacatacttctgaaagtcatggtagagaat
tctgacttcaccccatcgcaggttggctgtctctttaccttccttgcccgtcagcttgcc
aagcccaacaacacattgtttgtgaacaggacactttttgaccaggtccttgaatttctg
tgcagtccggatgatgactcccgccattcagagaggcaacaggtccttttagaattgctc
caggcaggaggaatagtacagtttgaagagagccgtcttatccaaatggcagaaaaagca
gaattctatcagatttgcgagttcatgtatgaacgagagcttcgctatgacaaaataatt
ggctgttacctgcgtgatccggtgagaaaggaagaagttttcaactatattcacaacatc
ctgtccatgcctggctacagtgctgaagaaaagcagtcagtgtggcagaaagctttggaa
catatagaggagttgctgttgctgagcccatgtaaagcagccgacttggtagccattcac
ttcagtgagcagattgagagcatcattacaaacctccaggaccagtttttactcttccag
tttctgaggagtctccttgatccgagagaaggcattaaccaagacctgatacacttacca
cccctcatcactgagcagttcattgagctactgtgccagtacagcccagaccaggttttg
gagacgcttaaagtcctggaatactgcagactggaagaaaccatccagataacccagaaa
catcagctccatgaagcttcttcatatttactggagaagaagggagatatccatggtgcc
tttctggttatgcttgagcgattgcagagcaagttgctgatgcttacacaagatgatgaa
agctcagctgaactccccttgctagaaaacattgaagatactttaatgaaaacaattgcc
ctttgccagaggaattcacacaatttagaccagcaacagcgagaggccctctggtttccc
ctgctggaggctatgatgtccccacaaaaattatctggttcttcacagtgtcgatactct
gaatctttgaagagtttgacaatgcaagtgctgaacaacatggctgcatttattgctctt
ccttcaatcctgcagagaattctacaggatccagtttatggaaaagggaaacttggagaa
attcaaggacttgtcctgggaatgctggacacttttaactatgaacaaacccttttagag
acaactacgaatcttttaaaccatgatctccactggtccctgtgtaacctaagagcttct
gtcactagagggcttaccccaaagcaggattattgctgcatttgtctacagcagtacaaa
agaaggcaagaaactgctgacgaaatcattgttttcagctgtggccacttgtaccattca
ctgtgtctgctgagtaaagagtgtgggatggtaaccaaaggcctgatgaggtggatgtgc
tataaatgcaactcaagtaacaagggaggaaaactgagtgagaacttctcggagctaaaa
aaaggaagtggagcatccttggcacagacaagttcagagtctctgttggatcctcagcaa
atccaagcttttgaccaactctgccggctcaaccgaggaacctccagactagctctcctg
acagaactgtctcgcggccatggtggtgaaaagcacgggctgctcagcatttcccacggc
gacccggccaccagcagtgtcttccagaacgagaacttccagctccatctggccccccct
ccgctggctgaagagtag
DBGET
integrated database retrieval system
