Nipponia nippon (crested ibis): 104011669
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Entry
104011669 CDS
T05756
Symbol
CNOT4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
nni
Nipponia nippon (crested ibis)
Pathway
nni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104011669 (CNOT4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nni03000
]
104011669 (CNOT4)
03019 Messenger RNA biogenesis [BR:
nni03019
]
104011669 (CNOT4)
04121 Ubiquitin system [BR:
nni04121
]
104011669 (CNOT4)
Enzymes [BR:
nni01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104011669 (CNOT4)
Transcription factors [BR:
nni03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
104011669 (CNOT4)
Messenger RNA biogenesis [BR:
nni03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104011669 (CNOT4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104011669 (CNOT4)
Ubiquitin system [BR:
nni04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104011669 (CNOT4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
Torus
DZR_2
Nup35_RRM_2
zf-CCCH_2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
104011669
NCBI-ProteinID:
XP_009462228
UniProt:
A0A091UZJ6
LinkDB
All DBs
Position
Unknown
AA seq
762 aa
AA seq
DB search
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGTVDKNKNKVTALQRPNSNNKDAWPSLQSSSKSANGLTMEHRKT
PPILENGTDPEHMTPDGADSDFGPIDKPSDSLSIGNGDSSQQITNSDTPSPPPGLTKPNP
VIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTSNDWPTAPEPQ
SLFTSETIPVSSSTDWQAAFGFGSSKQQEDDLGFDPFDITRKALADLIEKELSVQDQPSL
SPTSLQNPAPHTTTAKGPGSGFLHPAAPANANSLSSTFPVMPQRFPQFQQHRAVYNSFSF
PGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHSTGLGGIPISDNSSSVESL
NMKEWQDGLRALLPNININFGGLPNASSPSNANHSVPTSNTATTDSLNWDSPGSWMDPAI
ITGIPASTGNSLDTLQDDNPPHWLKSLQALTEVDGPSAAPSQTHHSNPFGTQIPLHRASW
NPYSPPSNPTSFHSPPPGFQTAFRPPSKTPTDLLQSSALDRH
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcagccctgatgctaaggaagaccctgtggaatgccccctttgcatggagcct
ctggaaattgatgacatcaacttcttcccttgcacctgtggctaccaaatctgtcgtttc
tgttggcatcgtatccgcactgatgagaatggactttgtcctgcttgcagaaagccatat
ccagaagatccagcagtgtacaaaccactctcccaggaagagctgcaaaggataaaaaat
gaaaagaaacagaaacaaaatgagaggaaacagaagatatcagagaatcgcaaacatttg
gccagtgtacgggttgtacagaagaaccttgtcttcgtggtagggttatctcagcgccta
gcagatccagaggttttgaaacgaccagaatattttgggaagtttggcaaaatacataaa
gttgtcattaataacagcacctcatatgcaggctcacagggtccaagtgctagtgcatat
gtaacctacatccgctcagaagatgctctcagagccatacaatgtgtcaataatgtggtg
gtagacggcagaacacttaaggcatcattaggtacaacaaaatattgcagttattttcta
aaaaatatgcagtgtccaaaaccagactgcatgtatctacatgaactgggagatgaagca
gccagtttcacgaaagaggaaatgcaggcgggtaagcaccaggaatatgaacagaaacta
ctgcaagaattatacaaactaaaccccaactttctccaattatctacgggtacagttgac
aagaacaagaacaaagtgacagcactgcagagacccaacagtaataacaaagatgcctgg
ccatcattacagagttcaagtaaatcagccaacggtttaacaatggaacacaggaaaacg
cctcctatattagaaaatggcacagacccagaacacatgactccagatggtgcagactca
gatttcggccctattgacaaaccttcagattccctcagtataggaaacggtgacagctcc
cagcagataacaaacagtgacacaccttcaccaccacctggtttaacaaaacccaatcca
gtcatacccatcagttcatctaatcacagtgcacggtctccttttgaaggggctgtaaca
gaatcacagtcgctcttctctgacaactttcggcaccctaaccccatccctagtgggctt
cctccattccccagctctccacagacttcaaatgactggcccacagcaccagaaccacag
agcctcttcacatcagaaactataccagtatcctcctccacagactggcaagcggctttt
gggtttggttcctccaaacaacaagaggacgacttagggtttgacccctttgacatcacc
cgcaaagccttagcagacctgattgagaaggaactgtcagtccaagaccaaccttccctc
tcgcccacatctcttcagaaccctgccccacacactacaactgccaaagggccaggctct
ggattcctgcatcctgctgcacccgcaaatgccaactctctcagtagcacctttccagtc
atgccacagaggttcccacagtttcaacagcatcgagcagtttacaactccttcagtttt
ccaggccaagcagctcgctatccttggatggccttcccacgcaatagcatcatgcacttg
aaccacacagcaaatcccacctcaaatagtaatttcttggacttgaatctcccaccacaa
cacagcacaggtctgggagggatccctatatcagacaacagcagttctgtagagagttta
aatatgaaggaatggcaggacgggctaagggcacttctaccgaacattaacatcaacttt
ggtggactgcccaatgcttcttccccctccaacgccaaccacagtgtaccaacgtccaac
actgccaccaccgacagcctgaattgggacagccctggcagctggatggaccccgcaatc
atcacaggtatcccagcctccacaggaaacagtttagacacccttcaagatgacaatcct
ccacattggctaaaatctcttcaggccctcacagaggtggacggccccagtgcagcgcca
tcacagacgcaccacagtaaccccttcggcacacagatccctctgcacagagccagttgg
aatccctactctcctccttcaaaccccaccagcttccattccccacccccaggctttcag
acagccttcagaccccccagtaaaacccccacagatctactacagagctcagcgctggat
cgtcattag
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