Nipponia nippon (crested ibis): 104012046
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Entry
104012046 CDS
T05756
Symbol
DDX46
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
nni
Nipponia nippon (crested ibis)
Pathway
nni03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nni00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104012046 (DDX46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nni03041
]
104012046 (DDX46)
Enzymes [BR:
nni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104012046 (DDX46)
Spliceosome [BR:
nni03041
]
Complex A
U2 snRNP components
U2 related factors
104012046 (DDX46)
Complex B
104012046 (DDX46)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
104012046
NCBI-ProteinID:
XP_009462662
LinkDB
All DBs
Position
Unknown
AA seq
1049 aa
AA seq
DB search
MTSRHYRKRSASRGRSGSRSRSRSPSDKRGKRGEDRRSRSRDRERRRERSRSRDKRRSRS
RDRKRQRRSRSRERERSRERRRSRSRERRRSRSRSRGRRSRSSSPSKNRKTENRSRSKEK
TEGVEVSKEKKKDKEDKEEEKDKDATTNTVATENFDQNKLEEEMRKRKERVEKWREEQRK
KAMENIGELKKEIEEMKQGKKWSLEDDDDDEEETAEGEKEGNEVEDEELDPLDAYMEEVK
EEVKKFNMRSVKGGGGSEKKSGPTVTKVVTVVTTKKAAAESEKKKGELMENDQDAMEYSS
EEEEVDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMTQEEVNVYRLE
LEGITVKGKGCPKPIKTWVQCGISMKILTALKKHGYEKPTPIQTQAIPAIMNGRDLIGIA
KTGSGKTIAFLLPMFRHIMDQRALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRV
VCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFD
MGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQH
VIVIEEENKFLKLLELLGHYQEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQY
DRDSIINDFKNGICKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNK
GYAYTFITEDQARYAGDIIKALELSGXPIPAXXXXXXDLEKLWADFKDQQKAEGKLIKKS
SGFSGKGFKFDETEQALANERKKLQKAALGLQDSDDEDTAVDIDEQIESMFNSKKRVKDM
AAPGTSNAPTPSAGNAEKLEIAKRLALRINAQKNLGAEAQVLVPFHFKDVMQQATNAILR
GGTIQAPTVSAKTIAEQLAEKINAKLNYVPIEKQEEEKQDGGQNESFKRYEEELEINDFP
QTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAK
AEITRLIKEELIRLQNSYQPTNKGRYKVL
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgaggcattatcggaagcgctctgcgtcacgtggacggtctggtagccgttct
agaagtcgctctccatctgacaaaagaggaaaacgtggagaagacagacggtctagaagt
agagacagagaacgtagacgcgagaggtcacgcagtagggacaagagaaggtctcgatcg
cgtgacagaaagcgtcaaagacgttcaagaagtagagaaagggaacggagccgagagaga
agaagatcccggagccgagagcgaaggcgctctagaagcagaagtagaggtagacggtct
cgatcctccagtccaagcaagaacaggaaaacagaaaacagatcaagatctaaagaaaaa
acagaaggtgtagaagtttccaaagaaaagaaaaaagacaaagaagacaaagaagaagag
aaggataaagatgctaccacaaataccgtggccactgagaattttgatcagaacaaacta
gaagaagaaatgagaaaacgaaaagaaagagtggagaaatggagggaagaacaacgcaag
aaggctatggaaaacataggagaactgaaaaaagaaatcgaagagatgaaacagggcaaa
aaatggagtttagaagatgatgatgatgatgaagaggaaactgcagaaggagaaaaagaa
ggcaatgaggttgaagatgaagagttagatcctttggatgcttatatggaagaagtaaaa
gaagaagtcaagaagttcaatatgagaagtgtgaaagggggaggtgggagtgaaaagaaa
tccggaccaactgttaccaaggtagtaaccgtggtgacaaccaaaaaggcagctgcagag
tcagaaaagaagaaaggggagctcatggagaatgaccaagatgcaatggagtattcttca
gaagaggaggaagttgatcttcagactgccctgactggctatcagaccaagcagagaaag
ctgctagaaccagtggatcatggaaagatagaatatgaaccttttaggaaaaacttctat
gttgaagtaccagaactagctaaaatgactcaagaagaggtgaatgtgtacaggctggag
ttggagggaattacagtcaagggaaaaggctgccccaaaccaataaaaacctgggtacag
tgtggtatttccatgaagattctcactgccctcaaaaaacatggctatgaaaagcccact
cccattcaaacccaggctatcccagcaattatgaatggacgtgatttgattggcattgct
aaaacaggaagcggaaaaactattgcatttctgttgcccatgttcagacacattatggat
cagagagcattagaagaaggagaaggtcccatagctgtcattatgacacctactcgcgag
ttggctttgcagattaccaaggagtgcaagaaattctcaaagacacttgggcttcgagtt
gtctgtgtgtacggaggaacaggaatcagtgaacagatagctgaactcaaaagaggtgct
gaaattattgtttgcacacctggacgtatgattgacatgttagcagctaacaatggtcgg
gtgacaaatctccgtagagtcacatatgttgtacttgatgaagcagacagaatgtttgac
atgggttttgagcctcaggttatgcgcattgtagacaacgtcaggcctgatcgtcagact
gtcatgttctctgctacttttcccagagctatggaggcattagctcggagaatcttaagt
aaacctatagaagtgcaggtcggaggcagaagtgttgtctgttctgatgtggagcaacat
gttattgtcatagaagaggagaacaagtttttgaagttactggagctactggggcactat
caggagaaaggatcggttatcatatttgtagataaacaagaacacgctgatgggttgttg
aaagatttaatgagagcctcttatccttgcttgtctcttcatggaggtattgatcagtat
gacagggacagcataattaatgatttcaagaatggaatttgcaaacttctggtggccaca
tctgtagcagcaaggggcttggatgtaaaacagttgatgctggtggtcaattacagctgt
cccaaccattatgaagattatgtgcaccgagcaggccgaactggacgagccggcaataaa
gggtatgcatatacattcattactgaggatcaggcacggtatgctggtgatatcattaag
gctttggaattgtcagggnntccaattcctgctnnnnnnnnnnnnnnnnntgatttggag
aagctctgggctgacttcaaagaccagcagaaggctgagggaaagttgattaaaaaaagc
agtggattctctggcaaaggttttaaatttgatgaaacagaacaggctttggctaatgaa
agaaagaagctacaaaaagcagctcttggcttgcaagattcagatgacgaagatacagct
gttgatattgatgaacaaattgaaagcatgttcaattcaaagaaaagagtaaaagacatg
gcagcaccaggaacatcaaatgctcctacaccatcagctgggaatgcagaaaaattggaa
attgctaaaagattggctttgagaatcaatgcccagaagaatcttggagcagaggcacaa
gtattggtccccttccactttaaggatgtgatgcagcaggctacaaatgctatactgaga
ggaggcacaattcaagctcctactgtatctgccaagaccattgcagagcaactggctgaa
aaaatcaatgctaagctcaattatgtacccatagagaagcaggaggaggagaaacaggat
ggaggacaaaacgaatccttcaagagatatgaagaagaattagagatcaatgacttccca
cagactgccagatggaaagttacctccaaagaagcgctacagagaatcagtgaatattct
gaagctgctattacaatcagaggaacttatttccctccaggcaaagaacccaaggaagga
gaacgaaagatttatttggctatagaaagtgccaatgaactggctgtacagaaagcaaag
gcagaaatcacacgacttataaaagaggagctcatcagattgcaaaattcataccaacca
accaacaaaggaagatacaaagttctatga
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