Nipponia nippon (crested ibis): 104012564 Help Entry 104012564         CDS       T05756                                  Symbol COL4A1 Name (RefSeq) collagen alpha-1(IV) chain   KO K06237   collagen type IV alpha Organism nni  Nipponia nippon (crested ibis) Pathway nni04382   Cornified envelope formation nni04510   Focal adhesion nni04512   ECM-receptor interaction nni04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:nni00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     104012564 (COL4A1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     104012564 (COL4A1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     104012564 (COL4A1)  09150 Organismal Systems   09158 Development and regeneration    04382 Cornified envelope formation     104012564 (COL4A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:nni04147]     104012564 (COL4A1)    00536 Glycosaminoglycan binding proteins [BR:nni00536]     104012564 (COL4A1) Exosome [BR:nni04147]  Exosomal proteins   Exosomal proteins of other cancer cells    104012564 (COL4A1) Glycosaminoglycan binding proteins [BR:nni00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    104012564 (COL4A1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  104012564 NCBI-ProteinID:  XP_009463218 LinkDB All DBs Position Unknown AA seq 1667 aa AA seqDB search MDPQRAKAQPISDGGSASGGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQGPEGPP GPPGLKGDTGEPGLPGTKGTRGPPGASGFPGNPGLPRIPGQDGPPGPPGIPGCNGTKGER GPVGPPGLPGLTGSIGPPGPPGMKGDPGEVVGLLPSRVLKGDKGFPGQPGLPGPPGTPGF QGPMGPQGPPGDPGPPGPPGLPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPGPSPHMKEN GSEVIKGEKGDPGEKGEQGAPGFPGSGFKGEKGEPGKPGPRGKPGKDGEPGPKGEPGLPG GFGIPGRPGEPGTKGDKGERGFPGPPGRVIDSGPVDTFGEKGEPGASGLPGPKGQKGEKG FPGIQGSRGPPGQPIPGKVGSPGPAGERGEKGEKGSPGFSLPGPPGRDGFPGPPGLPGPP GPPGKTDGIDQCQQGEPGAPGSPGPPGRDGFPGEMGEKGDKGESCALCDKVGPPGLPGPQ GPPGPAGFPGQSGFKGDRGLPGLDGLPGVPGPPGTPGLMGSPGAKGEPGDFSYDSILKGE KGDPGFPGQPGIPGREGRPGKDGFPGPQGPKGASGTAGLKGERGPPGQPGFPGVRGERGF PGPPGIGVPGLPGDKGDRGFAGTPGLPGLPGAKGEAGRTVPLPGPPGADGLPGPPGFPGP QGDKGNPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFQGQPGSPGLPGTPGTPGLDGLP GVPGLQGQKGEPGVGLPGPKGLPGPPGPAGIPGEKGNPGLPGLRGEQGFPGIAGQQGLRG DPGLPGLQGLQGPPGAPGLGPQGSPGPAGQPGPQGPPGFPGIKGERGFPGIPGLDMPGPK GDKGSQGQPGVPGSVGLPGLPGPQGSVGLKGSAGPKGEMGVMGTPGLPGIPGPVGDRGLP GEKGSQGFKGVVGPQGDPGVKGDKGEAGLPGKPGTMDNMDMVSLKGQKGDQGEKGDHGAT GEKGLRGEYGEPGIPGKDGEPGTPGHPGPKGDQGPPGYPGDPGIPGQKGSVGEMGLPGTP GEKGLPGVPGSPGTPGFPGQKGEKGDKGAPGFPGIGFPGSPGEKGEPGRTGSPGLSGEKG EKGSAGIPGMPGAPGPKGSPGMAGFPGNPGPHGEKGEKGLPGLSGIPGLKGEPGEPGVPG PAGSIGQKGEPGYDGIPGAAGTKGEQGLPGRGLPGFPGAKGDKGAKGDVGFPGSPGSPGI PGLKGEPGYAGPPGPKGSQGLPGLPGSAIEGPKGDRGPQGQPGLPGLPGPTGPPGPPGLK GAKGEQGSSGWPGTPGGPGVKGDPGFQGLPGSPGLPGDIGQKGDLGPPGVPGVPGPKGSP GFPGLKGERGDQGLPGSKGLQGPPGPPGVFQLVKGDPGLPGPVGPVGLKGFPGLPGPKGQ QGVTGPSGIPGPPGSPGFDGKPGQKGEVGPYGPPGPRGFPGPPGPEGLPGAMGPPGAPSV AHGFLVTRHSQTTEEPSCPFGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPF LFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGDNIRPFISRCSVCEAPAMVIAVHS QTIQIPPCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTC NYYANAYSFWLATIERNEMFKKPTPSTLKAGDLRSNVSRCQVCMRKT NT seq 5004 nt NT seq  +upstreamnt  +downstreamnt atggacccgcagcgggccaaggcccagcccatcagtgatggtggtagtgcctctgggggt tgttctggttgtggaaaatgtgactgcagtggagtaaaagggcaaaagggagaaagaggc ttgcctggactacagggtgtgattgggtttcctggaatgcaaggacctgaaggtcctcct gggccaccagggcttaagggtgatactggagaaccaggactgccaggaacaaagggaaca agaggccccccaggagcatcaggctttccaggaaacccaggtcttcctcgcattcctgga caagatggccctcctggtccacctggcattccaggatgtaatggcacaaagggtgaaaga ggtccagtaggtcccccaggtttaccaggactgacggggagcataggacccccaggacct cctggaatgaagggagacccaggtgaagtggtgggtcttttaccttctagggtgctaaaa ggtgataaaggctttcctggccaacctggactacctggtccccccggaactccagggttt cagggaccaatggggccacaagggcctccaggggatccaggtcccccagggccaccagga ctcccaggcgagaagggctacatgggcttaggctttcagggtcccaaaggtgaaaaggga gaacaaggggtaaggggccccccaggcccaccaggaccatcaccacatatgaaagaaaat gggagtgaagtcataaagggagaaaagggtgatccaggtgaaaagggtgaacagggagcc ccaggatttccaggttcaggtttcaaaggagaaaaaggtgaacctgggaagcctggtcca cgtggaaagcctggaaaagatggtgaaccaggaccaaaaggagaacccggtttgcctggt gggtttgggattccaggacgacctggggagcctggtacgaagggtgacaaaggtgaacga ggttttccaggacctccaggaagagttatagattctggaccagtagatacctttggtgaa aaaggagagcctggagcttcaggtttgcctggaccaaaaggtcaaaaaggtgaaaaaggt ttccctggcatacaaggaagccgaggacctccaggtcaaccgattccaggcaaggtagga tcacctggtcctgctggagagagaggtgaaaaaggtgaaaagggttctccgggattctct ttacccggaccccctggaagagatggtttcccaggtcccccggggttgcctggcccacca ggtcctccaggcaaaacagatggaattgatcagtgccagcagggagaacctggtgcacca ggtagtcctggacctccaggaagagatggatttccaggagagatgggagagaaaggtgac aaaggtgaatcctgtgccttatgtgataaagtaggacctcctggacttccaggaccacaa gggccaccaggtccagcaggttttccaggacaatcaggtttcaagggtgacagaggctta cctggacttgatggccttccaggggtacctgggccccccggcactccaggacttatgggc agccctggggcaaaaggagaaccaggagatttttcttatgattctatcctgaaaggtgaa aagggagatcctggtttcccaggacaaccaggtattcctggaagagaaggaagaccagga aaagatggattcccaggtccccagggtccgaaaggagcatcgggtacagctggcttgaaa ggagaacgtggtccccctggccaacctggattccctggagtacgtggtgaaagaggtttt ccgggccctcctgggataggcgtgccagggttacctggtgacaaaggagacagaggcttt gctggaaccccaggtttaccaggccttccaggagcaaagggcgaagcaggacgaactgta cctctccccggacctcctggggcggatggccttcctgggccacctggtttccctggaccc caaggtgacaaagggaatcctgggcttccaggtagacccggcctgccaggagaaaaaggt gctgttgggcagccaggtatagggttccctggacctccaggacccaaaggtttccaaggt cagcctggctcgcctggtctgccagggactccgggaacccctggcctggatggtttgcca ggtgtaccaggtttacaaggtcaaaaaggcgaacctggtgtaggtctccctggccctaag ggattgccaggccccccaggcccagctggcatccctggagaaaagggaaatccaggactg cctggcttacgtggcgagcaaggctttccgggcatagctggacagcaaggactgagaggt gaccccggcctcccaggactgcaaggcttgcagggccctcccggtgcgccggggctgggc ccgcagggatcgccaggacctgccgggcagccgggaccccagggaccgccaggatttcct ggaataaaaggagaaaggggcttccctggtatcccaggtctagatatgccaggaccaaaa ggggataaaggtagccagggccagcccggagtaccagggtctgtggggttacccggcctg ccaggtccacaggggtccgttggactgaaaggatcggcaggacccaaaggagaaatggga gttatgggaactcctggattgccaggaattcctggaccagttggagatcgagggttgcct ggtgaaaaaggtagccaaggtttcaaaggtgtagttggaccacagggtgatcctggtgtc aaaggagataaaggtgaagctggtctcccaggcaaacctggaacgatggacaacatggac atggttagtctcaaaggccaaaagggagatcaaggagaaaaaggggaccatggagcaaca ggagaaaaagggttacgtggggaatatggagaaccaggaattccagggaaggatggtgaa cctggtactccaggacatccaggaccaaaaggtgatcagggccccccagggtacccaggg gatccaggaattccaggacaaaaaggatcggttggtgaaatgggattgccaggaacacct ggagaaaagggtctgccgggagtaccaggttcaccaggcacaccagggttccctgggcaa aaaggtgaaaaaggagacaaaggagcaccaggttttccaggaattggctttccagggtct cctggtgagaagggagaaccaggaagaacgggtagtccaggtttatctggagagaagggt gaaaagggtagtgcaggaattcctggaatgccgggtgccccaggtcccaaaggatcccct ggcatggcaggatttccaggcaaccctggcccccatggagaaaagggtgaaaaaggactt cctggcttaagtggcattccaggtttaaaaggagaaccaggtgaacctggcgttccgggt cctgctggttccattggacagaagggtgaaccaggttacgatgggattccaggtgcagct ggtacaaagggtgaacaaggtcttccaggtagaggacttccaggatttcctggtgcaaag ggagataaaggtgcgaaaggtgatgtgggttttccaggatccccaggaagcccggggatc ccaggcctgaaaggagaaccaggatatgctggcccaccaggccctaagggcagccaaggt cttcctggactaccgggaagtgcaattgagggccctaaaggagacagaggaccccaaggc caacctggccttccaggtttaccaggtccaacagggccaccaggacccccaggtctgaaa ggcgccaaaggagagcaggggagcagtggctggcctgggactcctgggggtccgggagtc aaaggtgatccaggtttccagggactgccaggtagtcctggtttaccaggagatattggt caaaagggtgatctgggacctccaggagttccaggtgttccaggtccaaaaggatctcct ggcttcccaggccttaagggtgagcgaggtgaccaaggtcttcctggatctaaaggttta caaggcccaccaggcccgccaggtgtttttcagcttgttaaaggggatcctggcttacct ggccctgtaggaccagttggtctcaaaggattcccgggacttccaggtcccaaaggacag caaggggtgacaggaccttcaggtatacctggaccacctggtagtccagggtttgatggt aaacctgggcaaaaaggagaagttggtccttatggtcccccagggcccagaggattccct ggtccacctggccctgaaggtttgcctggggctatgggcccaccaggtgcaccatctgtt gctcatggcttccttgttaccagacacagtcaaaccactgaagaaccatcgtgtccattt ggaacaaggctgatttaccatggctactccttgctttatgtacaaggcaatgaaagagca catggccaagatctgggcacggcaggaagctgtcttcgtaaatttagtaccatgcctttc ttattctgcaatatcaacaacgtatgtaactttgcatcaaggaatgactattcctactgg ctgtccactcctgaacccatgccaatgagtatggctcctatcactggtgataatatcaga ccattcatcagcagatgctctgtgtgtgaagctcctgctatggtaatagctgttcacagt caaacaattcaaataccaccgtgtccggaaggctggagttcactttggattggttactcc tttgtcatgcacaccagtgctggtgcggagggctctggccaggccctggcgtctcctggt tcctgcctagaggagtttcgcagcgctcccttcattgaatgccatggccggggcacctgc aattattatgcaaatgcttacagcttctggcttgccactatagagaggaatgagatgttc aagaaaccgactccctcaactttgaaagcaggggatctgcgctcaaatgttagtcgttgt caagtctgtatgagaaaaacataa

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