Nipponia nippon (crested ibis): 104012565
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Entry
104012565 CDS
T05756
Symbol
COL4A2
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
nni
Nipponia nippon (crested ibis)
Pathway
nni04382
Cornified envelope formation
nni04510
Focal adhesion
nni04512
ECM-receptor interaction
nni04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nni00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104012565 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104012565 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104012565 (COL4A2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
104012565 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nni04147
]
104012565 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
nni00536
]
104012565 (COL4A2)
Exosome [BR:
nni04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104012565 (COL4A2)
Glycosaminoglycan binding proteins [BR:
nni00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104012565 (COL4A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104012565
NCBI-ProteinID:
XP_009463219
LinkDB
All DBs
Position
Unknown
AA seq
1714 aa
AA seq
DB search
MDISQPPSAPGDLGLLLILMEVVLSAVKVDAGGKTYTGPCGGRDCSGGCQCFPEKGSRGQ
PGLLGSQGFTGPPGLMGIPGVQGPKGHKGERGYPGISGPKGEVGQRGVTGFPGADGVPGH
PGQPGSRGKPGHDGCNGTVGDPGDSGSPGLSGFPGTIGVQGPKGQKGEPYVLPPDIAGRY
RGEPGDPGFNGFPGPPGTLGIQGPTGPRGERGRPGPPGPPGPPGPQGNRGLGFYGEKGEQ
GPPGPPGPPGLPTRELMGVSPDKYKGERGEPGQKGEAGIPGVLLYAPERGEEGVMGFPGQ
RGLPGVNGFPGLSGERGFPGFDGPPGGYGPRGSKGEPGEIGPPGPVSYFPSHIPRKGARG
DPGFPGVSGLQGDPGEEGDTGPPGPPGFSDVDGDKPGLPGEMGPKGEKGELGSPAYQVGP
PGFPGKHGTPGLRGPPGPVGSPGSLFGLKGQEGTPGRYGLQGFPGPRGQKGPKGEEGDCS
KCLVGDEFRRGSTGPPGPPGFPGTPGQPGRKGEPGDQGPHGIPGYPGPKGFSGLDGFPGP
KGEKGDSLHITTKGTKGIRGDPGLPGIRGEDGFPGRDGLDGLPGQPGLPGDGIRGFPGDP
GYPGELGPKGFPGEAGLPGEGFPGPKGYQGPPGDHGQDGNPGPPGLPGLPGEPGQLDCGQ
VIEDFSRGDGTEPIWSGAGCVRPPKGSQGKPGLPGATGAKGARGFPGDPGPVGYPGLNGT
RGDPGREGFPGPPGFIGPRGDRGPNGLPGLQGHPGLTGKSGAPGAAGLKGLPGDVLGAAA
GSRGDVGLPGFPGLKGTPGDQGVPGVRGADGNPGLPGPKGDPGPQGLPGLMGLPGTPGTR
GFPGPPGNPGPDGRPGSQGPVGPPGARGEGGEQGFPGPVGLKGLSGDKGETGYPGLQGIP
GVTGPPGISGMDGFPGDKGSKGSPGIDGFKGMPGLKGRPGIKGIKGEFGPFGARGDKGSQ
GARGFKGDRGDQGPPGEPPKLKPSMMLEVKGEKGDVGERGTKGFFGLKGSKGMPGIPGKT
GTPGSPGHPSYVAGVKGDIGAKGLTGLKGYPGPAGSPGIRGFPGSTGGRGEKGVPGISGH
FGTPGSHGEIGEPGDTINLPGXXXXXXXXLKGEIGVPGLTGTRGGTGQKGEGGDPGFPGI
EGPRGTQGVPGSLGQEGLRGLVGPPGQQGSPGTPGFQGEKGTPGWPGLPGQAGLPGLRGI
SGLHGLPGTKGLPGSPGPDGYGSAGFPGAVGDKGEAGEPSRVEGSRGPPGQKGDRGVPGV
QGPLNGQEGFPGPPGISNISGYPGDKGSPGLDGVPGYPGLQGQPGIPAPPGSKGESGQTG
VSGQIGPKGSRGDPGAAGRPGVPGYPGPKGRKGEQGVIGFMGGVGFPGDLGPIGPKGDRG
VTGFQGPPGSPGLPPLPPRLVAEQGSPGPRGNIGPQGSPGDMGPQGPPGDPGFRGSPGEP
GFQGRGGIPAPPGSRGEQGATGFQGPVGFEGQPGRPGSPGLPGMPGRSVSMGYLLVKHSQ
SDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDICYY
ASRNDKSYWLSTTAPLPMMPVAEDDIRPYISRCSVCEAPAVAIAVHSQEASIPHCPEGWR
SLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLT
TIDQPFQSKPSADTLKAGLIRSHISRCQVCMKNL
NT seq
5145 nt
NT seq
+upstream
nt +downstream
nt
atggacatctcgcagcctcccagtgcgcctggggatctggggcttctgctgatcctgatg
gaagtcgtgctgtcagccgtcaaagtggatgccggtggaaaaacttacacaggaccatgt
ggaggaagagactgcagtggaggatgtcagtgtttccctgaaaaaggaagccgtggccag
ccaggactccttggatcacaggggttcactggaccaccagggttgatggggatcccaggc
gtgcaaggtcccaaaggtcacaaaggtgaaagaggatatccaggaataagtggacccaaa
ggagaagtggggcaaagaggagtcactggattccctggggcagacggagtgccaggtcat
ccagggcagccaggatcaagggggaaaccaggtcatgatggctgtaacgggacagtaggt
gaccctggtgactcgggaagtcccggactctctggtttccctggtaccattggagtccaa
ggaccaaagggccagaagggggagccctatgtactgccaccggacatcgcaggccgatac
aggggggaacctggggatccagggttcaatggttttccaggacctccaggtacgctgggt
attcaaggacctactggtccaagaggagagcgaggaagaccaggaccaccagggccccca
ggaccaccaggaccacaaggcaacaggggccttggcttctatggagaaaaaggtgaacag
ggccccccaggtcctccaggtccacctgggcttcctacaagagagctgatgggtgtgtcc
cctgacaaatacaagggtgaaagaggagaacctggacaaaaaggggaagctggaattcca
ggtgtacttctctatgctcctgaaagaggtgaagaaggggtaatgggcttcccaggacaa
aggggactgcctggcgtcaatggttttccgggactcagtggagaaagaggttttccagga
tttgatggtccaccaggtggctatggtcctaggggaagcaagggggagccaggcgagatc
ggtcctccaggaccagtttcctattttccttcccacatcccaaggaaaggtgcgagaggt
gatcctggctttccaggtgtttctggactacagggagacccaggagaggagggagatact
gggccacctggtcctcctgggttctctgatgtggatggggataagccaggcttacctgga
gaaatgggaccaaaaggcgaaaaaggtgaattaggatctcctgcttatcaagtgggcccg
cctgggtttccgggtaaacacggcacaccaggactccgtggtccacctggtcccgttgga
tctcctggttctctctttggattaaaaggacaggaagggacgccaggtagatatggcctg
caaggtttccctgggccaagaggacaaaaaggacctaaaggcgaagaaggggattgcagt
aaatgccttgtgggtgatgaattcagaaggggctctactggcccccctggccctcctggc
tttccaggaacccctggccagcctgggaggaaaggagaacctggtgatcaaggaccacat
ggtattcctggctaccctggaccaaaaggattttcgggtctagatggatttcctgggcca
aaaggagaaaagggagattctttacacataactactaaaggcaccaaaggaatccgagga
gatcccgggctgcctggtatcagaggtgaagatggtttcccagggagagatggattagat
ggtttaccaggacagcctggccttccgggtgatggtatcagaggtttccctggtgatcct
ggttatccaggtgaattaggcccaaagggctttccaggagaagcaggcctgccgggcgaa
ggatttcctggtccaaaagggtaccagggtcctccaggtgaccatggacaagatggaaac
ccgggacctccaggtctgcccggtctgccaggagagcctggccaactagactgtgggcag
gtcattgaagacttttctagaggagatggaactgagccaatatggtcaggcgcgggctgt
gtgaggccgccaaagggatctcaaggcaagccaggactgccaggagccacaggtgcaaaa
ggtgcaagaggattcccaggtgatccaggtccagtgggatacccagggctaaatggtaca
cgaggtgatccaggtcgggaaggattcccaggtcctccaggttttattgggcccagggga
gacaggggcccgaacggtctacctggactgcagggacacccaggccttacaggaaaatcc
ggtgctccgggagcggcaggactgaagggccttcctggtgacgttttaggagcagcagca
ggttcccgaggggatgttgggctccccggcttcccggggttgaaaggcacaccaggagac
caaggagtaccgggagttagaggagcggatggtaacccaggtttgccagggcccaaagga
gatccagggccgcaaggtctccctggtttgatgggattgccaggaacaccaggaacccgc
ggattcccaggaccaccaggaaaccctgggccagatggcaggcctggctctcaaggacct
gttggtccacctggtgctaggggagaaggtggtgagcaaggttttcctggccccgtgggc
ctgaaaggtctgtctggtgacaaaggtgaaacaggttacccgggattacaaggtatacct
ggtgtgactggtccccctggcataagtggaatggatggctttccaggagataaaggctca
aaaggttcacctggcattgatggtttcaaaggcatgccaggcctaaaaggaagaccaggc
atcaagggaataaaaggagaatttggcccattcggggctcggggcgataaaggctcacaa
ggcgcacgtggctttaaaggtgaccgtggggatcaaggcccaccgggagaacccccaaag
ctcaagcccagcatgatgttggaagttaaaggtgaaaaaggagatgttggagaaaggggc
acgaagggattctttggcttaaaaggtagcaagggaatgccaggcattcctggaaagaca
ggaactccagggtcccctgggcatcccagctatgtggccggtgtgaaaggggacatcggt
gcgaaagggctgacaggtctgaaagggtatcctggtccagctggctctcctggcatcaga
ggcttccctggcagcacaggaggcaggggagaaaagggtgttccaggaatttcaggccat
tttggtactcctggctcacacggtgaaataggtgagccaggagacactataaacttacca
ggannnnnnnnnnnnnnnnnnnnnnnccttaaaggggaaattggtgtgccaggcttaaca
ggcacaagaggaggtacaggacaaaaaggcgaaggcggtgatcctggtttccctggcatt
gaaggccccagaggcacacagggtgtccctggctctctgggacaggaaggtttgcgggga
ctggtcggccccccagggcagcaaggaagccccgggacacctggatttcaaggtgaaaag
ggaactcccggctggcctggcttaccaggacaagcaggcttgcctggcttaagaggaatc
agtggactgcatggtttaccaggcactaagggcttgccaggatcaccaggtccagatggc
tacggctctgccggtttcccaggtgcagtgggtgacaaaggggaagcgggagagccaagc
agagtggaaggcagccgaggacctccgggtcagaagggagacagaggtgttccaggagtc
caaggacccttaaatgggcaggagggatttccagggcctcctgggatttcaaatatatca
ggatatcctggtgataaaggctccccaggtctagacggagtgccaggctatccaggacta
caggggcagcctggaataccagctccaccaggaagcaaaggagaaagcggacaaacaggt
gtgagtggacaaattggcccaaaaggaagtagaggtgatcctggagcagcagggagacct
ggcgttcctgggtacccaggaccaaagggtcgtaagggtgaacaaggtgtcatcggcttt
atgggcggagtaggatttccaggtgatttgggacctatcggacccaagggggatagagga
gtaactggctttcagggccctccaggctctcctgggctgccccctcttcctccaaggctg
gttgctgagcaaggttcaccaggtccccgtggaaatataggacctcaaggtagcccagga
gatatgggacctcagggtccaccaggcgatccaggtttcagaggctcacctggagagcca
ggattccagggcaggggtggcattccagctcctcccggctccagaggtgaacaaggagca
acagggtttcagggtccagtgggatttgaaggtcagccaggccgccctggtagccccggg
ctgccgggcatgccgggtcgcagtgttagcatgggctacctgttggtgaagcacagccag
tccgatcaagagccaatgtgcccagttggcatgaacaaactctggagtggatacagccta
ctgtactttgaaggacaagagaaagcacacaaccaggatctagggctggctggttcatgt
ttggctcgttttagtactatgccattcctctactgtaaccctggggacatttgttattat
gcaagtcgaaatgataaatcctactggctctcaactacagcacctcttccaatgatgcct
gtggcagaagacgacattaggccatatatcagtcgctgctcagtttgtgaggccccagct
gtggcaattgctgtccatagccaagaagcttctattcctcactgccctgaaggctggcgc
agtttgtggattggatattccttccttatgcacactgctgctggtgatgaaggtggagga
cagtcactggtttctcctgggagctgcctggaagatttcagagcgactcctttcatcgaa
tgcaacggcgcgcgaggaacctgtcactactttgcaaataaatacagcttctggctcacg
acaatcgaccagcccttccaaagcaagccctcggcagatacactcaaggcaggactcatc
cgaagccatatcagcagatgtcaagtctgtatgaaaaatttatag
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integrated database retrieval system
