Nipponia nippon (crested ibis): 104012764
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Entry
104012764 CDS
T05756
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
nni
Nipponia nippon (crested ibis)
Pathway
nni03030
DNA replication
nni03420
Nucleotide excision repair
nni03430
Mismatch repair
nni03440
Homologous recombination
nni03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
nni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104012764 (RPA1)
03420 Nucleotide excision repair
104012764 (RPA1)
03430 Mismatch repair
104012764 (RPA1)
03440 Homologous recombination
104012764 (RPA1)
03460 Fanconi anemia pathway
104012764 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nni03000
]
104012764 (RPA1)
03032 DNA replication proteins [BR:
nni03032
]
104012764 (RPA1)
03400 DNA repair and recombination proteins [BR:
nni03400
]
104012764 (RPA1)
Transcription factors [BR:
nni03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
104012764 (RPA1)
DNA replication proteins [BR:
nni03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
104012764 (RPA1)
DNA repair and recombination proteins [BR:
nni03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
104012764 (RPA1)
MMR (mismatch excision repair)
104012764 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
104012764 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
CATSPERD-E_C
DUF4939
IBR
Motif
Other DBs
NCBI-GeneID:
104012764
NCBI-ProteinID:
XP_009463435
LinkDB
All DBs
Position
Unknown
AA seq
603 aa
AA seq
DB search
MQGENVSKPVLQVINTRAIATGNGPPRYRVLMSDGVNTLSSFMLATQLNSLVEEERLSAQ
CICQVNRFIVNSLKDGRRVVILMDLDVLKTADKVGGNIGNPVPYNEGEWQGQQRSSAPAA
NAAPSKPQQQNGNLSAAGPAAPKYHAPSNQFGKASAPSSVKTPGGSQAKVVPIASLNPYQ
SKWTICARVTQKGQIRTWSNSRGEGKLFSIELVDESGEIRATAFNDQADKFFPLIELNKV
YYFTKGNLKTANKQYTAVKNDYEITFTSETSVVPCDDAQHLPSVQFEFVSISDLENTPKD
SIVDVIGICKSYEDVTKITVKANNREVSKRNVHLMDTSGKLVTATLWGNEAEQFDGSRQP
VIAIKGARVSDFGGRSLSVMSSSTVFINPDSPEAFKLRGWFDSEGQLLECASISDVRGGP
ASGANTNWKTLFEAKSENLGQGDKADYFSCVGTVVHLRKENCMYQACPSQDCNKKVIDQQ
NGLYRCEKCDREFPNFKYRMMLLVTIADCLEYQWVTCFQESAEFILGQNAAFLGELKEKN
EQAFEEVFQNANFNTYEFRIRVKLETYNDESRIKATAMDVKPVNYREYSKRLIASIRRNA
QLG
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgcagggggagaacgtctccaagcccgtgctgcaagtcatcaatacacgggctattgct
acaggaaacgggccaccacgttaccgggtgttgatgagtgacggggttaacacactctcc
tcattcatgttggcaacacagctgaactctctggtggaagaggaacgcttatcagcccag
tgtatttgccaggttaacagattcattgtcaacagcctgaaagatggaaggagagtggtt
atactgatggatttagatgttctgaaaactgctgataaggttggtgggaatatcggcaat
ccagtgccgtacaacgaaggtgagtggcaagggcagcaacgttcttcagctccagcagca
aacgcagcacccagcaaaccacagcaacaaaatggcaatttgtcagcagcaggtcctgca
gctccgaagtaccatgctccctcaaaccagtttggtaaagcgagtgctcccagctcggtg
aagacaccaggggggtcgcaggccaaagtggtgccgattgccagcttgaacccgtaccag
tctaagtggaccatttgtgctcgtgttacccaaaaaggccagatccgcacatggagcaac
tcccgtggtgaaggaaagctgttttctatagagctagttgatgaaagcggtgagattaga
gcgactgcattcaatgatcaagcagacaagttctttccactcattgaattgaacaaggta
tattattttaccaaaggcaatttgaagactgctaacaagcaatatacagctgttaagaat
gactatgagataacattcactagtgagacttctgttgtgccctgtgatgatgcccagcat
cttccatctgttcagtttgagtttgtatccatctctgacttggagaacacacccaaagac
tcaatcgttgatgtaattggaatttgtaagagctatgaagatgtcactaaaattacagtg
aaagctaacaatagggaggtatcaaagaggaatgtgcatctgatggatacatcagggaag
ctggtgacagcaacgctatggggaaatgaggctgaacagtttgatggttctagacaacct
gtgatagccatcaaaggagcccgagtctccgattttggtggtagaagcctgtctgtcatg
tcctcgagtaccgtattcatcaaccctgatagccccgaggcttttaagctccgaggatgg
tttgactccgaggggcagcttctggaatgtgcctcgatctctgacgtgaggggtgggcca
gcatctggggcgaacaccaactggaaaacgttgtttgaagccaaatctgagaacttggga
caaggagataaggcggattattttagctgtgtgggcacagtcgtacatctgcgcaaagag
aactgtatgtaccaggcatgtccctctcaggattgcaataagaaagtgatagaccaacaa
aatggactgtatcgttgtgaaaagtgtgatcgtgaattccccaacttcaagtaccgcatg
atgcttctggtgaccattgcagactgcctagagtatcagtgggtgacttgtttccaagag
tcagcagaattcattcttgggcaaaatgcagctttcctgggagaactgaaggaaaagaac
gagcaggcgtttgaagaagtgttccaaaatgcaaacttcaacacgtatgagttcaggatc
cgagtaaaactggagacttacaacgatgaatctcgtattaaggctacagcaatggacgtc
aaacctgtgaactacagagaatacagcaagaggctgatcgcaagcatcaggagaaatgct
cagctagggtga
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integrated database retrieval system
