Nipponia nippon (crested ibis): 104013736
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Entry
104013736 CDS
T05756
Symbol
SKIV2L2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
nni
Nipponia nippon (crested ibis)
Pathway
nni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104013736 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nni03019
]
104013736 (SKIV2L2)
03041 Spliceosome [BR:
nni03041
]
104013736 (SKIV2L2)
03009 Ribosome biogenesis [BR:
nni03009
]
104013736 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
nni03016
]
104013736 (SKIV2L2)
Enzymes [BR:
nni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104013736 (SKIV2L2)
Messenger RNA biogenesis [BR:
nni03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
104013736 (SKIV2L2)
Spliceosome [BR:
nni03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104013736 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
104013736 (SKIV2L2)
Ribosome biogenesis [BR:
nni03009
]
Eukaryotic type
Pre-60S particles
Helicases
104013736 (SKIV2L2)
Transfer RNA biogenesis [BR:
nni03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
104013736 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
104013736
NCBI-ProteinID:
XP_009464548
LinkDB
All DBs
Position
Unknown
AA seq
1015 aa
AA seq
DB search
MRGNGIDCSLSLNTGTRSPKKRSEEKSSVAGTGKAKREVEVDSTEDAVLGKKPKLEDVIS
EDANLADLMPQVKVQAVETVEGCTHEVALPADEDFTGLKPRTGKAAKEYPFILDAFQREA
ILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQ
DVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWE
ETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDG
LHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSNVFKIVKMIMERNFQ
PVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVEHVLPL
LKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTSASKFDGK
DFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTY
NMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNLEGQYNKIAIPNEENVVIYY
KIRQQLAKLGKEIEEYVHKPKYCLPFLQPGRLVKVKNEGDDFGWGVVVNFSKKSNVKPNS
GELDPLYVVEVLLHCSKESLKNSATEAAKPARPDEKGEMQVVPVLVHLLSAISSVRLYIP
KDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQGLKKVIQKVEAFEHRMYSH
PLHNDPNLETVYKLCEKKAQIAMDIKAAKRELKKARTVLQMDELKCRKRVLRRLGFATSS
DVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFVFQENSSEMPKLTEQ
LAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLMDVVYTWANGANFAHICKMTD
VFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atgagaggaaatgggattgactgctcactctctctcaacactggaacaaggagtcctaaa
aaacgatcggaggaaaaatcttcagtggctggaacagggaaggccaaaagggaagttgaa
gtcgatagtaccgaagatgccgttttgggaaaaaagccaaaattggaagatgttatatcg
gaagatgctaatctggcagacctgatgcctcaagtaaaggtgcaagctgtagaaactgtt
gaaggttgtacacatgaggttgcgcttccagcagatgaagacttcacaggtctgaagcca
agaactggaaaagctgcaaaagaatatccatttattcttgatgcctttcagagagaagct
attctttgtgtagataataaccagtctgtgttagtgtcagctcatacatcagctggtaaa
actgtttgtgcagagtatgcaattgccctggctttgagggagaaacagcgtgtgatattt
acaagtccaattaaagctttgagtaatcagaagtaccgtgagatgtacgaagaatttcag
gatgttggtttgatgactggggatgtcaccattaatcctacagcttcttgtctggtaatg
acaactgagattttgaggagtatgctctacagaggttctgaggttatgcgagaagtcgca
tgggttatttttgatgaaatccactacatgagagattcagaacgtggtgtggtttgggaa
gagacaattattttgctccctgacaacgttcattatgtgttcctttctgcaactattcca
aatgcccgtcagtttgctgaatggatctgccatcttcacaaacagccttgccatgtgatt
tacactgactatcgacccactccgctgcagcattatatattcccagcaggaggagatgga
ctccatctggttgttgatgagaatggagatttcagagaagataattttaatacagcaatg
caagtgcttagagatgcaggagacttagcaaaaggggaccagaaaggcaggaaaggaggc
acgaaaggcccttcaaatgtttttaagattgtgaagatgatcatggaaaggaatttccaa
cctgtgattattttcagcttcagtaagaaagactgtgaagcctatgcacttcagatgacg
aagttagatttcaatacagatgaagaaaaaaagatggttgaagaagtgttcaataatgca
attgattgtctgtcagatgaagacaaaaagcttcctcaggttgagcatgtacttcctctt
ctgaagcgaggaattggtatccatcatggtggtctgcttcctatcttaaaagaaaccata
gaaattcttttctctgagggcctcataaaggccttatttgcaacagagacttttgctatg
ggaattaatatgccagccaggactgtgctatttacaagtgccagcaaatttgatggaaaa
gattttcgatggatatcctcaggtgaatacattcaaatgtcaggtcgtgcaggacgccga
ggtatggatgacagaggaatagtaattcttatggtggatgaaaaaatgagtccaacaatt
ggcaagcagcttttgaagggttcagctgatcccttaaacagtgcattccacctgacgtac
aacatggtattgaacttgcttcgagtagaggaaattaaccctgaatacatgttagaaaaa
tccttctatcagttccaacattacagaactattccagaaatagtagaaagagtgaataat
ttggaaggacagtacaacaaaatagcaattcccaatgaagaaaatgtggtcatatactac
aaaatccgacagcagcttgcaaaactgggtaaagagattgaagaatatgttcacaaacca
aagtattgcttgccctttctacagccaggaagactggtaaaggtgaagaacgaaggtgat
gactttggatggggagtggttgttaatttctctaagaaatcgaatgttaagccaaattct
ggtgaattggacccattatatgtggttgaagtgctactgcactgcagcaaagagagtttg
aaaaattctgctactgaggctgcaaagccagccagacctgatgagaaaggagaaatgcag
gttgttcctgtcttggtacatcttctctcagctatcagcagtgtccgactttacataccg
aaagacctgaggcctattgacaacaggcaaagtgtgttaaaatctatacaggaagtacag
aagcgatttcccgatggagtaccattactagaccctattgatgacatgggcatcaaagat
caaggactgaaaaaagtaatccaaaaagtagaggcatttgagcacaggatgtattctcat
cctcttcacaatgatcccaacttggaaactgtatacaaactttgtgaaaaaaaagcacag
attgctatggacattaaagcagcaaagcgagaactgaagaaagccagaactgtcttacaa
atggatgaactcaaatgccgcaagcgtgttttgagaagactggggtttgccacgtcttca
gatgttattgagatgaaaggacgcgttgcttgtgaaatcagcagtgctgatgaactactc
ctgacagaaatgatgttcaacggtctcttcaatgacttatctgcagaacaggcaactgcg
ctactaagctgttttgtatttcaagagaattccagtgaaatgccaaaattgacagagcag
ttggcaggacctcttcggcaaatgcaggagtgtgcaaaaagaatcgccaaggtctctgca
gaagcaaaactggaaattgatgaagaaaattacttaaattctttcagacccaacctaatg
gatgttgtgtacacatgggcaaatggagctaactttgctcacatctgcaaaatgactgat
gtctttgaaggtagcataatccgttgcatgagaaggctagaagaattgcttcggcagatg
tgccaggctgcaaaagccatcgggaacacagagttggaaaataagtttgcagaggggatt
acaaaaatcaagagagatattgtgtttgctgcaagcctttacctgtaa
DBGET
integrated database retrieval system
