Nipponia nippon (crested ibis): 104013754
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Entry
104013754 CDS
T05756
Symbol
DDX1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
nni
Nipponia nippon (crested ibis)
Brite
KEGG Orthology (KO) [BR:
nni00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nni03041
]
104013754 (DDX1)
03016 Transfer RNA biogenesis [BR:
nni03016
]
104013754 (DDX1)
Enzymes [BR:
nni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104013754 (DDX1)
Spliceosome [BR:
nni03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
104013754 (DDX1)
Transfer RNA biogenesis [BR:
nni03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
104013754 (DDX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
104013754
NCBI-ProteinID:
XP_009464565
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQMEGKKGKATIKTGGAVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATRGVTKGKYYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYLDIDKGQIKFSKNGKDLGLAFEIPPHIRNQALFAACVLKNAELKF
NFGEEDFKFPPKDGYIGLCKAPDGSVVKSQHSGSAQVVQTQNLPNAPKALIVEPSRELAE
QTLNNVKQFKKYVDNPKLRELLIIGGVAARDQLSVLEQGVDIVVGTPGRLDDLVSTGKLN
LSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVLVNPKADKLWERLGKNHIRTDEVHAKDNTRPGAN
TPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDRKGHQF
SCVCLHGDRKPQERKQNLERFKRGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAKEKEKVWYHVCSSRGKGCYNTRLKEEGGCTIWYNEMQLLG
EIEEHLNCTIAQVEPDIKVPVDDFDGKVTYGQKRALGGGLYKGHMDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgttttcggaaatgggtgttatgcctgagatagctcaagcagtggaggagatg
gactggcttcttcctacggatatccaagcagaatccatcccactcatcctgggaggtggt
gatgtacttatggctgctgaaacagggagtggaaaaactggtgcttttagtattccagtt
atccaaattgtttatgaaacactgaaggaccagatggaaggcaagaaaggaaaagcaact
attaaaactggcggggcagtgctcaataaatggcagatgaacccatatgatagaggatca
gcttttgcaattggatcagatggtttgtgttgtcaaagcagagaggtaaaagaatggcat
ggatgcagagcaactagaggcgtgactaaagggaaatactactatgaagtttcctgtcac
gaccaaggcttgtgcagagttggttggtcaactatgcaggcttcactagatttgggcact
gataaatttggctttggctttggtggcactggtaagaaatctcacaacaagcaatttgac
agctacggtgaggaattcactatgcatgatacaattgggtgttatctagacatagataaa
ggacaaataaaattttccaaaaatgggaaggaccttggccttgcgtttgaaatcccaccg
cacataagaaaccaagcactttttgcagcttgtgtactgaagaatgctgaattgaaattc
aattttggtgaagaagacttcaagtttccaccaaaagatggctatattggtctttgcaag
gctccggatggtagtgttgtaaaatcacaacactcaggaagtgcacaagtggttcaaacg
cagaaccttccaaatgctccaaaagcattgattgtagaaccgtcaagagagcttgcagag
caaactttgaacaatgtgaagcagttcaaaaaatatgtcgataatcccaaattaagggag
ctgttaattattggtggggttgctgcaagagaccaactctctgtactggaacaaggagtg
gatattgttgttggaactcctggaagactggatgacctggtctcaacaggaaagcttaat
ttatctcaagttagattcctggttctggatgaagctgatggccttctcctccaaggttat
tcagatttcataaacaggatccacagtcaaattcctcagataacctcagatggaaagaga
cttcaggtgattgtgtgctctgcaacactacattcttttgatgtgaaaaaactatctgaa
aagatcatgcattttcccacctgggttgatttgaaaggagaagattctgtccctgaaact
gtacaccatgtagttgtgcttgtaaatccaaaagctgacaaactctgggaaaggcttggc
aagaatcatatcagaactgatgaagtacatgcaaaagacaatacaagacctggtgctaac
actccagaaatgtggtctgaagctattaaaattctaaaaggagaatacaccgttcgggca
atcaaagaacacaagatggaccaagccattattttctgtaggactaaaatagactgtgat
aatatggagcagtacttcatccaacagggcggaggccctgataggaagggacatcagttc
tcatgtgtctgtctgcatggtgacagaaaacctcaagaaagaaagcaaaacctggaaaga
tttaagagaggagatgtccgtttcttgatctgcacagatgttgctgctagaggaattgat
attcatggtgttccatatgttatcaacgtcacactccctgatgaaaaacagaactatgtt
catcgaattgggagagtaggcagagctgagaggatgggtctggcaatctcccttgtggca
aaagaaaaagaaaaggtttggtatcatgtatgcagtagtcgtggaaaagggtgttataat
actagactgaaggaagaaggaggttgtaccatatggtacaatgagatgcagttgctgggg
gagattgaagaacacttaaactgcactattgcccaagttgaaccagacataaaagtacca
gtggatgattttgatgggaaagtcacatatgggcagaaaagagctctgggtggtgggctg
tataaaggccacatggatattctggcacctacagtacaagagttggctgcccttgaaaag
gaggctcagacatctttcttgcatcttggctatcttcctaaccagctgttcagaacattc
tga
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