Nipponia nippon (crested ibis): 104015524 Help Entry 104015524         CDS       T05756                                  Symbol COL11A1 Name (RefSeq) collagen alpha-1(XI) chain   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism nni  Nipponia nippon (crested ibis) Pathway nni04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:nni00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     104015524 (COL11A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:nni00536]     104015524 (COL11A1) Glycosaminoglycan binding proteins [BR:nni00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    104015524 (COL11A1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Laminin_G_1 Laminin_G_3 Motif Other DBs NCBI-GeneID:  104015524 NCBI-ProteinID:  XP_009466571 LinkDB All DBs Position Unknown AA seq 1807 aa AA seqDB search MEMQRWSARWKTRRWPWDSAVTVLITFAILLRAAEVRGAEPVDVLKALEFHNSPEGVSRT AGFCTNRRDSKGSDVAYRVSKTAQLSAPTKQLYPGGDFPEDFSILMTVKPKKGIQSFLLS VYNEQGIQQVGVEVGRSPVFLFEDQNGKPAPEDYPLFRTVNIADGKWHRVAISVEKKSVT MIVDCNKKTTKPLERSDKTVVDTNGITVFGTRILDEEVFEGEIQQLLIIADPRAAYDYCE HYSPDCDSPVPNAAQAQDPQVDEYTPEDFIEYDYEYGDADYKETDTVTEGPPLFEETVAQ TEANVVDGFQEYSIAENDYGPQTEAPSRTTEVNEQNPVEEVFAEEYITGEDYDKKTEETE YGSRGVDLSESDLLVDGDLGEYDFYEYKEYEEKPTDSTNEEFGPGVPAETDITETSVTGH GAYGEKGQKGEPAVIEPGMLIEGPPGPRGPAGLTGPPGLQGPVGPPGDPGERGPPGRPGL PGADGLAGPPGTMLMLPFRFGGDGEKGPTISAQEAQAQAILQQARIAMRGPPGPMGLTGR PGPVGGPGAAGAKGESGEPGPQGPRGVQGAPGPSGKAGKRGRPGADGARGMPGEPGAKGD RGFDGLPGLPGDKGNRGDRGPQGPPGLPGEDGSRGEDGEVGPRGLPGEAGPRGLLGPRGT PGPPGQPGIAGVDGPSGPKGNMGPQGEPGPPGQQGIPGPQGLPGPQGPIGPPGEKGPQGK PGLPGLPGSDGPPGHPGKEGQSGDKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGE KGEDGFPGFKGDMGLKGDRGEVGQPGPRGEDGPEGPKGRAGPSGDPGAAGPAGEKGKLGV PGLPGYPGRQGPKGSTGFPGFPGANGEKGARGLHGKPGPRGQRGPTGPRGSRGPRGPTGK PGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGK TGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGIXXX XGKDGPAGLRGFPGERGLPGAQGPAGLKGGEGPQGPPGPIGSPGERGAAGTAGPIGLPGR PGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPSGSPGEDGDKGEIGEPGQ KGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGPRGFPGPPGP IGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGE PGEAGNPGPPGESGTSGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGD PGPPGEPGPAGQDGVGGEKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGATGAEGRQGE KGAKGEPGAEGAPGKTGPVGPQGPAGKPGPEGLFFSVGEQGLPGAPGQDGPPGPLGPPGL PGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGAKGDAGISGPAGPLGP PGPPGLPGPQGPKGSKGSSGPAGQKGDSGLPGPPGPPGPPGEVIQPLPIQSPKKTRRSPD YMLSDAGDNILDYSDGMEEIFGSLNSLKQDIEHMKYPMGTQNNPARTCKDLQLCHPDFPD GEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKENPGSWFSEFKRGK LLSYLDVEGNSINMVQMTFLKLLSASARQNFTYNCHQSVAWHDASSDSYDKALRFLGSND EEMSYDNNPYIKALHDGCASRKGYAKTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEV GPVCFLG NT seq 5424 nt NT seq  +upstreamnt  +downstreamnt atggagatgcagagatggtccgcaaggtggaaaacgaggaggtggccctgggactcggct gtgaccgtgctcatcaccttcgccatccttctgcgggctgcggaggtcagaggagctgaa cccgttgatgtgctaaaagcattagaatttcacaattcaccagaaggagtatcaagaaca gcaggattttgcacaaacagaagggattcaaaaggatcggatgtcgcctatagagtttca aaaactgcacagctgagtgccccaacaaagcagctgtacccaggtggagattttccagaa gatttttcaatattaatgacagtgaaacctaaaaagggtatccagtccttccttctgtct gtctacaatgagcaaggaattcagcaagtaggtgttgaagttggtagatcccctgtcttc ctgtttgaagaccaaaatggaaaacctgccccagaagactatcctcttttcagaacagtc aacattgctgatggcaagtggcatcgagtagctattagtgtggagaaaaaaagtgttaca atgattgttgactgtaacaaaaaaactacaaaaccacttgaaagaagtgacaaaacagtt gtggacaccaatggcatcactgtttttggaaccaggattctggatgaagaagtttttgag ggtgagatccagcagctgttgattatagctgaccccagagctgcatatgactactgtgag cattatagcccagactgtgattccccagtgcccaatgctgctcaggctcaagatcctcaa gttgatgagtacacaccagaagattttatcgaatatgactatgagtatggggatgcagat tataaagaaactgatactgtaacagagggacccccactgttcgaagagacagtagcacaa acagaggcaaacgttgttgatggatttcaagagtatagcatagctgaaaatgactatggg ccccagacagaagctccctccagaactactgaagtaaatgagcaaaatcctgttgaagaa gtatttgctgaagaatacataactggagaggattatgataaaaaaactgaggaaactgaa tatggaagcagaggagtagacctcagtgaatctgatctgctggtagatggagatttaggc gaatatgatttttatgaatataaagaatatgaagagaaaccaactgattccactaatgag gagtttggtccaggtgttcccgcagagaccgatatcacagaaacaagcgtgactggacat ggggcttatggagaaaaaggccaaaagggagaaccagctgtgattgaacctggtatgctc attgaaggaccaccaggaccaagaggacctgctggtcttacaggtcccccaggtctacaa ggtcctgttggccctccaggtgaccctggtgaaaggggtccacctggtcgccctggtctc cctggtgctgatggtttagcaggtcccccgggtaccatgttaatgttgccattccgcttt ggtggagatggtgagaagggcccaacaatctcagctcaggaagctcaagcacaagctatt ctccaacaagctaggatcgccatgagaggtccacctggtcccatgggactcactggaaga ccaggtcctgtgggtggacctggagcagcaggtgctaaaggtgaaagtggtgaaccaggt ccccagggtcctcgtggtgttcaaggtgcccctggtccaagtggaaaagctggcaaaagg ggacgtcctggagccgatggtgccagaggaatgccaggagaacctggtgcaaagggtgac agaggatttgatggccttcctggcctccctggtgacaaaggtaacaggggagaccgtggc ccacagggacctcctggcttacctggtgaagatggatcaagaggagaagatggggaagtc ggaccaagaggtctcccaggtgaagctggtccacggggattactgggccccagaggtaca cctggtccccctggacaacctggcattgcgggtgttgatggaccttcaggcccaaaagga aacatgggtcctcaaggggaaccaggacctcccggtcagcaaggaattccgggcccacaa gggcttcctggtccacaaggtcctattggacctcctggtgaaaaaggacctcaaggcaag cctggccttcctggccttcctggttctgatgggcctcctggtcatcctggcaaagagggt cagtctggagataaaggtgcattggggcctccaggtcctcagggtcccattggctatcca ggtcctcgtggtgtaaagggagctgatggtgtccgtggtctcaagggatccaaaggcgaa aagggtgaggatggttttccaggatttaaaggtgacatgggccttaaaggtgaccgggga gaagttggtcagccaggtccacgaggagaagatggtccagaaggtccaaaaggtcgagca ggtccatctggggacccaggtgctgctggtccagctggggaaaagggtaagcttggtgta cccggactgccaggatatccaggaagacaaggtccaaagggctcaactggtttcccagga tttccaggtgccaatggagagaaaggtgcaaggggattacatggcaaaccaggccccaga ggacagcgaggaccaacaggtccaagaggctcaagaggtcccagaggtcccactggcaaa ccaggtccaaagggtactgcaggcaatgatggtcctcctggcccaccaggtgaaagggga ccacaagggcctcagggacctgttggattccccggaccaaagggacctccagggccacct ggaaaagatggcttgcctgggcacccaggacagcggggtgagactggttttcaaggaaaa actggtcctcctggtcctggtggtgttgttggccctcagggtcctactggtgagactggc ccaattggtgaaagaggtcatccaggtcctcctggcccaccaggtgaacaaggcctccca ggtgctgcaggaaaagaaggtgctaagggtgatccaggccctcaaggcattcnnnnnnnn nnngggaaagatggaccagcaggtcttcgtggtttccctggagagagaggccttccaggt gctcagggtccagctggtctgaagggaggagaaggcccacaaggcccacctggcccaatt ggttcaccaggggaacgtggagcagcaggcactgctggcccaattggtctaccgggtcgt cctggacctcagggtcctccaggccccgcaggggagaagggtgctcctggtgaaaaaggt cctcaaggtcccgctggacgtgacggagtacagggtcctgtaggacttcctggtcctgct ggtcctagtggttctcccggagaagatggtgacaagggtgaaattggtgaaccgggtcag aaaggtagtaaaggtgacaagggagaaaatggtcctccaggtccaccaggtctccagggt cctgttggtgcccctggtatagctggaggtgatggggagccaggcccaagaggtcagcaa gggatgtttgggcaaaaaggtgatgaaggtcctcgaggcttccctggccctccagggccc attggcttacagggtctgcctggcccaccaggtgaaaagggtgaaaatggtgatgtgggc ccaatgggtccacctggccctccaggtccaagaggtccccagggtcctaatggagctgat ggtcctcaaggccccccaggctcaatcggctctgttggaggtgttggtgaaaagggtgaa cctggagaagctggtaaccctgggcctcctggagaatctggaacatctggtccaaaaggt gaaaggggagaaaaaggtgaggctggtccacctggagcagctggaccaccaggtgctaaa ggacctccaggtgatgatgggcctaagggtaacccaggcccagttggttttcctggagat cctggtccccctggggaacctggtccagctggtcaagatggtgttggtggagagaagggt gaagatggtgatcctggtcaacctggcccaccaggtccttcgggtgaagctggcccacct ggtccacctggaaaaagaggacctcctggagcaactggtgctgaaggcagacaaggtgaa aaaggtgcaaagggtgaacctggtgcagaaggggctcctggaaaaacaggtccagttggt ccacagggacctgcaggaaaacctggcccagagggtctttttttttctgtgggagaacaa ggtctacctggagctccaggtcaggatggccctccagggcctctgggtccacctggcttg cctggcctgaaaggagacccaggttccaaaggagagaagggacatcctggtttgattggc ctgattggacctccaggagaacagggagaaaagggtgataggggtcttcctggcccacag ggatctcctggagccaagggtgacgcaggaatttccggtcccgctggtccacttggaccc cctggtcctcctggtttacctggtccccaaggtccaaaaggttccaaaggatccagtggt cctgctggtcaaaagggtgacagtgggttacctggtccccctggtcctccaggtcctcca ggcgaggtaatccagccgctgccaatccagtcacccaaaaagacaagaagatctcctgat tacatgttatctgatgctggtgataatattctggattattccgatggcatggaagagatc tttggttcattgaattcactgaagcaagacattgagcatatgaagtatccaatgggcact cagaataacccagcccgaacttgcaaagacttgcaactctgccacccagacttcccagat ggggaatattggattgatcctaaccagggctgttctggagactccttcaaagtatactgc aatttcacagcaggtggggaaacctgcatctacccagataagaaatctgaaggagttaga atttcatcatggccaaaggagaatccaggatcttggtttagtgaatttaagcgaggcaaa cttctttcctatttggatgttgaaggcaattccattaatatggtccaaatgacgttcctt aaactattgagtgcctctgccagacaaaatttcacttacaactgtcatcagtccgtagct tggcatgatgcatcatctgacagctatgacaaagcactaaggttcttaggatcgaatgat gaagaaatgtcttatgacaacaatccttacatcaaagctcttcacgacggctgtgcatca agaaagggctatgcaaagacggtgatcgaaatcaacacacccaaaatagaccaagtgcct atagttgatgtgatgatcaatgactttggtgatcagaaccagaagtttggatttgaggtc ggtcctgtctgcttccttggttaa

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