KEGG   Nipponia nippon (crested ibis): 104015843
Entry
104015843         CDS       T05756                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
nni  Nipponia nippon (crested ibis)
Pathway
nni03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nni00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104015843 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:nni03041]
    104015843 (SNRNP40)
Spliceosome [BR:nni03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    104015843 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    104015843 (SNRNP40)
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st WDR55 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 ANAPC4_WD40 Beta-prop_SCAP Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_HPS5 Cytochrom_D1 WDR54 WD40_like Beta-prop_Nup120_160 PROPPIN PQQ_2 Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 104015843
NCBI-ProteinID: XP_009466912
LinkDB
Position
Unknown
AA seq 284 aa
MCLYGYTSSQIGDSSGDVLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTV
AVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNT
YQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSN
AMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAGGSADRFVYVWD
TTSRRILYKLPGHAGSVNELAFHPEEPIILSASSDKRLYMGEIQ
NT seq 855 nt   +upstreamnt  +downstreamnt
atgtgcctttatggctacacatcatcccagattggagacagtagtggcgatgtgctgtgg
aatgtctacggggactgcgataactacgccaccctgaagggacacagcggggcagttatg
gagctgcactataacacagacgggagcatgctcttctcagcatccacagacaaaaccgtg
gctgtgtgggatagcgagactggagagagagtgaagaggctgaagggccatacctcgttt
gttaactcctgttacccagcgaggcgaggaccccagcttgtctgtacaggcagtgacgat
gggacagtgaagctgtgggatatcaggaaaaaagctgctgtccagacgtttcagaacaca
taccaggtcttggctgtaactttcaatgacaccagtgatcagatcatatccggaggcatc
gacaacgatattaaggtgtgggaccttcgccagaacaagctcacttacacgatgagagga
cacgcggactcggtgacaggcctcagtctgagttcggaaggctcctacctgctctccaac
gcaatggacaacacggttcgcatctgggacgtgcgaccgtttgcccctaaagagagatgt
gtaaagattttccaggggaacgtgcataattttgaaaagaatcttctgaggtgctcttgg
tccccggatgggagcaaaatagcagggggatcggccgacaggtttgtctacgtgtgggac
accacgtccaggaggattttgtacaagctgccaggccacgctgggtcggtgaacgaactg
gccttccacccagaggaaccaattatactctccgcgtccagcgacaaaagactgtacatg
ggggagatccagtga

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