Nipponia nippon (crested ibis): 104016593
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Entry
104016593 CDS
T05756
Symbol
PCDH1
Name
(RefSeq) protocadherin-1
KO
K16498
protocadherin delta 1
Organism
nni
Nipponia nippon (crested ibis)
Pathway
nni03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
nni00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
104016593 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
nni01009
]
104016593 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
nni04515
]
104016593 (PCDH1)
Protein phosphatases and associated proteins [BR:
nni01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104016593 (PCDH1)
Cell adhesion molecules [BR:
nni04515
]
Cadherins
Protocadherins
104016593 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
K319L-like_PKD
Cadherin_4
TMEM154
Mid2
MLANA
Syndecan
EphA2_TM
Motif
Other DBs
NCBI-GeneID:
104016593
NCBI-ProteinID:
XP_009467776
LinkDB
All DBs
Position
Unknown
AA seq
1198 aa
AA seq
DB search
MKPLASCLGLWLLFQLPALVSGTRVVYKVQEEQPPNTLIGSLASDYGFPDVGHLYKLEVG
APYLRVDGKTGDIYTTETSIDRESLRDCQHLGPGEPCFLEFEVSITDLILNSSPRLLEGQ
IEVLDINDNTPNFASPVLTLSIPENTNIGTRFPNPLAMDRDSGLNGVASYELTAGPEAQE
LFGLQVAEDQDEKQPQLIVMGSLDREQWDSYDLTIKVQDGGNPPRASSALLRITILDMND
NAPKFEKALYEAELSENSPMGHSVLQVKANDSDQGANAEIDYSFHQASDMVRRLLRLDRT
TGLITVQGPIDREDVSILKFSVMAKDKGANPKSARTQVVVTIKDMNDNAPSIEIRGIGLV
THQDGMANISEDVPVETAVALVQVSDRDEGENAVVTCVVAGDVPFQLRQASETGSDSKKK
YFLQTTTPLDYESVKEYTIEIVAVDSGNPPLSSTNSLKVQVVDVNDNAPVFSQSYTEVAF
PENNEPDDLVMEVSASDADSGSNAKLVYSLVTDPSSKGSFTIDPDSGEIRVKAVLDREQR
ERYEFLVVAADKGSPSLKGTASVAINVMDRNDNDPKFMLSGYNFSVMENMPPLSPVGMVT
VIDADKGENARIQLSVEQDNGDFVIQNGTGTILSSISFDREQQSTYTFRLKAVDGGDPPR
SAYVGVTINVLDENDNAPFITSPSNATYKHILPHTSPGQQVSKVKAEDIDSGVNAELTYS
ITGGNPFELFQISPHSGDITLEKEILRKHHGLHRLVVRVNDKGKPSRHGTALVHFYVNET
LANRTLLDTLVGHSLDTPLDIDIAGDPEYERSKQRSNILFGVIAGIVAVTLVIVLVILVR
YCRQREAKSGYQAGKKETKDLYAPKQASKSGKSKSKVKKSKSPKPPKPTEDEEETGLQKS
LKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQD
LPATNTFVGTGDNNSTGSEQYSDYSYRTNPQKYTNKQLPHRRVTFSAASQAQDLQDPSQH
SYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVAM
TGTCTRECTEFGHSDTCWMPGQSSPSRRPKNALKLSTFVPYQDRGSQEQVGNGSPRLSEE
RSTKMANLRLLPTYSAFSNSSHEPCKDSPMEEIPLTQTSDFQPATTPSSQTTKREIYL
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgctggcatcttgcctgggcctgtggctcctcttccagctccctgcactggtc
tctgggacacgtgtggtctacaaagtgcaggaggaacaaccccccaacaccctcataggg
agcctggcctccgactatggcttcccggatgtggggcacctctacaagctggaagtgggg
gccccgtacctacgtgtggatggcaagactggggacatctacaccacagagacctccatc
gaccgggagagcttgcgtgactgccagcaccttgggcccggagagccctgcttcctggag
ttcgaagtgtccatcactgacctgatcttgaacagcagcccacgcctgcttgaggggcag
atagaggtgctcgatatcaatgacaacacccccaactttgcctcgcctgttctcaccctc
tccatccctgaaaacaccaacattgggacgcgcttccccaaccccctggccatggaccgg
gactcgggactcaatggcgttgcctcttacgagctgacggctggtccggaggcacaggag
ctctttgggctgcaggtggcggaggatcaggacgaaaagcagccacagctgattgtcatg
gggagcctggatcgggagcagtgggactcctatgatctgaccatcaaggtgcaggacgga
ggcaacccaccacgggcgagcagtgccctgcttcgtatcaccatactggacatgaatgac
aatgcgcccaagttcgagaaggccctgtacgaggcagagctctccgaaaacagccccatg
gggcactctgtcctccaggtgaaagccaacgactcggaccagggcgccaacgctgaaatc
gactactctttccaccaagcctcggacatggtgcgccggctgctgcgcctggaccgcacc
acagggctcatcaccgtgcaggggcccattgaccgtgaggatgtcagcatcctcaagttt
tctgtcatggccaaggacaagggggccaaccccaagagcgcccgcacccaggtggtggtc
accatcaaggacatgaatgacaacgcgccctccatagagatacggggcattggactcgtg
acccaccaggatggcatggcaaacatctcagaggatgtgccagtagagacagcagtggct
ctggtacaggtgtccgaccgagatgagggcgaaaatgccgtggtgacctgcgtggtggct
ggtgatgtcccattccagctgcggcaggctagtgaaacagggagtgacagcaagaagaaa
tacttcctgcagaccaccacgccgctggactacgagtcggtgaaggagtacacgattgag
attgtggcggtggactcggggaatccacccctctccagcaccaactctttgaaggtgcag
gtggtggacgtgaatgacaatgcgcccgtcttcagccagagctacaccgaagtggccttc
cctgagaacaatgagcctgacgacctggtgatggaggtgagcgccagtgatgctgacagt
ggctccaacgccaagctggtttactccctggtgacagacccctcctccaagggctccttc
accattgaccccgactccggggagatccgggtgaaggcggtgctagaccgagagcagcgg
gagcgctatgagttcttggtggtggcagcagacaagggcagccccagcctcaagggcaca
gcatctgtggccatcaatgtcatggacaggaatgacaacgaccccaagttcatgctgagc
ggctacaacttctcagtgatggagaacatgccgcccctcagccctgtgggcatggtgacg
gtgatcgatgctgacaaaggagaaaatgcccgcatccagctgtcggtggagcaagacaat
ggggattttgtcatccagaatggcactggcaccatcctctccagcatctcttttgaccgg
gagcagcagagcacatacactttccgactcaaggcggtggatggtggggatcctcccagg
tctgcctatgtgggggtgaccatcaacgtcttggatgagaatgataatgcccctttcatc
acttcaccttccaatgccacctacaaacacatccttccccacaccagccctggccagcag
gtgagcaaggtcaaggcagaggacattgactctggtgtcaatgcggagctgacctacagc
atcacaggaggcaatccttttgagctcttccagatctccccgcacagtggagacatcacc
ctggagaaggagatcctgcgcaagcaccatggcctgcaccgcttggtagtgcgcgtcaac
gacaagggcaaaccctcgcggcatggcacagcgctggtgcacttctacgtcaatgagaca
ctggccaaccgcacgctgctggacacgctggtggggcacagcctggacacaccactcgac
atagacatcgctggagaccccgaatatgagcgcagcaagcagcgaagcaacatcctcttt
ggagtcattgctggcatcgtggctgtcaccctggtcatcgtgctggtcatcctggtgcgc
tactgccggcagcgggaggccaagagcggctaccaggcaggcaagaaggagaccaaggac
ctgtacgcacccaagcaggccagcaagagtggtaagagcaagagcaaggtgaagaagagc
aagtccccgaagccacccaagcccacggaggatgaggaggagacaggactgcagaaatcg
ctcaagttcaacctcatgaatgactctgtcagtgacagcccccgaatccacctgcccctc
aactacccgccaggcagcccagacctgggtcgccactaccgctccaactcgccactgccc
tccatccagctgcagcctcagtcaccctctgcctccaagaagcaccaagtggtgcaggac
ctgccagccaccaacacctttgttggcaccggggacaacaactcgacaggctccgagcag
tactcggactacagctaccgcaccaatccccagaaatacaccaacaagcagttacctcat
cgccgagtgacgttctctgcagccagccaggctcaggacctgcaggatccctcccagcac
agctactatgacagcgggctggaggagtcagagaccccaagcagcaaatcatcatcaggg
ccccgcatcgggccactagccctgcctgaggaccactatgaacgcaccacacccgacggc
agcatcggggagatggagcaccctgagaatgatctccggcctctgcccgatgtagccatg
actgggacctgtacccgggagtgcacggagttcggccactctgatacctgctggatgcct
ggccagtcctcccccagccgcaggcccaagaatgccctcaaactctccacttttgtgcct
taccaagacagagggagtcaagagcaagtcgggaatggcagccccagactctcagaagag
cgcagcaccaaaatggccaacctccgcctgctccccacgtacagtgccttctccaatagt
agccatgagccctgcaaggactctcccatggaggaaattcctctcacccagacctcggac
ttccagccagctaccaccccctcgtcccagaccaccaagagggagatatacctgtga
DBGET
integrated database retrieval system
