Nipponia nippon (crested ibis): 104017474
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Entry
104017474 CDS
T05756
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
nni
Nipponia nippon (crested ibis)
Pathway
nni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104017474 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nni03019
]
104017474 (EDC4)
Messenger RNA biogenesis [BR:
nni03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104017474 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
104017474 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
Beta-prop_HPS5
WD40_CDC20-Fz
WD40_Prp19
WDR55
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
104017474
NCBI-ProteinID:
XP_009468778
LinkDB
All DBs
Position
Unknown
AA seq
1479 aa
AA seq
DB search
MAKAACGGGKAGQLYGIIFPPKQPELTPYERDFRCSLMAAALRGWARLPRGTGGIALRRL
CPAPGGVPLGPASLPEEPGSQRGGLYQPGSVNENQRQSNSYNGDLNGLLVPDPIVAGDGP
SLAKPVHRSISLGALQEKQVICLSGDDSSTCVVISAKDVEIVASSDSSITSKARGSNKVK
IQPVARYDWEQKYYYGNLIAVSNSYLAYAIRAATNGSAMVRVLSVSAAERTLLKGFTGGV
ADLAFAHLNSNQLACLDEAGNLFVWRLAMDKEKIQEEILVNIKRPDNTPLNTSRRIIWCP
FIPDDNEESGEEGSQTLALLHEDRAEVWDLDIIRTNNSSWPVEVPSIKEGFIVVKGHSTC
LSEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKK
QDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTVRFSPDIFSSTNILPSLKVCLDLSAE
YLILSDVQRKVLYVMELMQNQEEGKAYFSSISEFLLTHPVLSFGIQAVSRCRLRHTEVLP
AEEENDNLSVEGAQGAGAVESAAGVLIKLFCVHTKALQDVQIRFQPLHSPDMSASMPSHG
SHEEFAFPDHMADLSTEGLGSEKGSVHGSQPDLRRIADLPVPADFLSLSNDAKPKLMTPD
AFMTPSTSLQQVSAAPSCSSLFSLNSIAVSPGSSVSSLTAVTAMSSTSVTDASMPRASED
LTVSPKMQLDTSLTLSSSSSSLQTSPRSHSVLIPGLSDKLTPKAPVPVTPGNPSLALELQ
EVEPLVVPQASPTRERSPDVISSASTAMSQDIPEIASETLQRSFAAAPSGLPTEVLEPSH
HADSMASAASALHLLSPRNRHNSEHSHHSLDMPPVEVDRLNAPSLLETALTQENASSDSV
VSQPWPAAPDITRETRNSMADSPRDEVEEKHKSSSYHRHSYHLLQHDSQDASAEQSDHDD
EVASLASTSGGFGAKASTQRLPVKDWKAKASPRASPKLKRKGKKDDGDVNQSPRSSNNQV
TPEFQDELMCILRSQQRELSELRQNQMELLQRLTDHLDAIQSSLMGHVERVIDSQQEQEQ
RRLDRALTEGQQRNGQLQEHLSQQLTQSLSTAVCNRLERTIREEMKKTIPQCISKSMDPI
AGQLSNTIAAKLTAVEGTLKESITKLVKSKNLTDTVVRATADTLQGPIQSAYREAFQSVV
LPAFEKSCQSMFQQINDTFKQGTQEYIQQLETHLKNKKVREQEARDPLLNQLRQLISTFQ
STTEQLASTVAASVHAEVQHQLHIIVSNMQESILAQVQRVIKGEVSLAMKEQQAAVTSSI
VQAMRSAAGTPIPSAHLDFQSQQTHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDT
QQVFGQHPCPLSQPVLLSLIQQLSSDLGTRTELKLNYLEEAVMHLDHSDPITRDHMGSVM
NQVRQKLFQFLQVEPHNTLSKPARRLMIMLQGLVTPGMT
NT seq
4440 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagcggcctgtggtggagggaaggccgggcagctgtatgggattatttttccc
cctaaacaacctgaattaactccttatgagcgagacttcaggtgttccctcatggcggcc
gcgctgcggggctgggcccgtctccctcggggcaccggtggcatcgccctccgccggctc
tgtcccgctccgggcggggtcccgctcggccctgcctcgctccctgaagagcccgggagc
cagcggggaggcctgtaccagccgggttcagtgaacgagaaccagagacagtcaaattcg
tataatggagacctgaatggactgctggtgcctgatcccatcgtggccggagatggacct
tctttggctaagccagtgcatcgcagcatttctctgggagccctgcaggagaagcaagtt
atctgtctttccggtgatgacagctccacttgtgtagtgatatcagcaaaagatgtggag
atagtggccagcagtgattccagcatcaccagtaaggccagagggagtaacaaggtgaaa
atacagcctgttgctagatatgactgggagcagaaatactattatggcaatctgatagct
gtttcaaactcttacctggcttatgccattagagctgccactaatggctccgctatggtg
cgggtgttgagcgtcagcgctgctgagcggaccttgctgaaaggattcacaggtggtgtg
gcagacctggcttttgctcatctcaactccaaccagctggcatgcctggatgaggccggc
aacctttttgtctggcgcctggccatggataaagaaaaaatccaagaggagatcttggtt
aacatcaagcgacctgacaataccccattgaacacctctcgaagaatcatctggtgccct
ttcatcccagatgataatgaggagagtggtgaagagggaagtcagacattggcgttgttg
catgaggacagggcagaggtgtgggatttggacattatccgaacgaacaacagctcctgg
ccagtggaagtgcctagcatcaaagaaggcttcattgtagtgaaaggccacagcacgtgc
ctgagtgagggagcactttctccagatggaactgtgttggccacagcaagtcatgatggt
tttgtcaaattctggcagatctatattgaggggcaagacgagccaaggtgtcttcatgag
tggaaaccccatgatggtaggcctctttcctgcctgcttttctgtgacaaccataaaaaa
caagacccagaggttccgttctggagatttctcatcacaggagcagatcagaatagagaa
ctgaagatgtggtgcactgtgtcgtggacctgtctgcagactgtccgcttttctcctgat
atcttcagctccacgaatattcttcccagcctgaaagtttgcctggacctctccgctgaa
tatctgatattgagcgatgtgcagaggaaagtcttgtatgtgatggagctgatgcagaac
caagaggagggcaaagcttacttcagctccatctccgagttcctccttacccacccagtc
ctaagctttggcatccaggcagtgagccgctgccggttaaggcacactgaagtgctccca
gcagaagaggaaaatgacaacttgagtgtagaaggtgctcagggagccggggctgttgaa
tcagcagcaggcgtgctaataaaactcttctgtgtgcacaccaaggccctacaggatgtg
cagattagattccagcctcttcatagtcctgacatgagtgcatccatgccttcccatggc
tctcatgaagaatttgcctttccagaccacatggctgatctaagcacagaagggctggga
tctgaaaaaggatcagtgcatggctctcaaccagacctgcggcgtattgctgatctgcct
gtaccagcagactttctgtctctctcaaatgatgccaaacctaagctgatgactccagat
gcattcatgacaccaagtacatctcttcagcaggtttctgctgccccttcttgcagctca
ctcttcagtttaaacagtatagctgtatctccaggcagcagtgtcagttccctgactgca
gtcacagccatgagtagcacttctgtcacggatgcctctatgcccagggcgtcggaagac
ctgactgtgagccccaagatgcagctggataccagccttacgctgagtagcagcagcagc
agtctccagactagtcctaggagccattcagttcttatcccaggcctctctgacaaacta
acaccaaaggcacctgttccagtcacaccaggaaacccctccctagcactggaactgcag
gaggtggagcccttggtggtgccccaggcttctcccacccgtgagcgctcgccagatgtc
atttcctctgcttccacagccatgtcccaagatatcccagagattgcttccgaaaccttg
caacgtagctttgcggcagctccatcagggctacctacggaggtgctggagcccagtcat
catgcagacagtatggcatccgctgcctcagccttgcatttgctgtctccaaggaaccgg
cacaattcagagcacagccaccactctttggacatgcctccagtggaggtggacagactg
aatgctccatcattactggagactgctttaactcaggaaaatgcatcttctgacagtgtt
gtgagtcagccatggccagcagctcctgacataaccagagaaaccaggaacagcatggca
gacagcccaagggacgaggttgaagaaaagcacaagagctcttcgtatcatcgacacagc
taccacctgctgcagcatgacagccaggatgctagtgcagaacaaagtgaccatgatgat
gaagttgcaagcttggcttctacatcaggtggatttggtgccaaagcgtctacgcagagg
ctgcctgtgaaggactggaaagccaaggcatcccctcgggcttccccaaagctaaagcgg
aagggcaagaaagatgacggggatgtgaaccagtcgccaagatcatctaacaaccaggtg
acaccagaatttcaggatgagctgatgtgcatattgaggagccaacagcgggagctctcc
gagctgcgtcagaaccagatggagctgctgcagagactcacggatcatcttgatgccatt
cagagctcccttatgggccacgtggagagggtgattgactcgcagcaggagcaggagcag
agaagactagaccgagcactgacagaaggacagcagcgcaatgggcagctccaggagcat
ctttctcagcagctcactcagtccctttccactgctgtgtgtaaccgtctggagaggacc
attcgtgaggagatgaagaagaccataccccagtgcatttccaagagcatggaccctatt
gctggtcagttaagtaatactattgctgccaagctcactgctgttgagggaacactgaaa
gagagtatcaccaagctagtgaaatcaaagaaccttacagataccgttgtgagggcaacg
gctgataccctgcaggggccgatccagtcagcttacagggaagcgtttcagagtgtcgtg
ttgccagcttttgagaagagctgccagtccatgttccagcaaatcaatgacaccttcaag
cagggcacacaggaatatatccagcagcttgagactcacttgaagaacaagaaggtacga
gaacaggaggcccgggacccgctgctgaatcagcttcgacagctcatcagcacctttcag
agcaccactgagcagctggcttctactgttgcagccagtgtccatgctgaggtgcagcat
cagctgcatattatcgtgagcaacatgcaggagtctattttggcccaggtgcagagagtc
atcaaaggagaagtgagcctggctatgaaggagcagcaagcagctgtcacctcgagcatc
gtccaggcaatgcgctcggcagccgggactccgatcccctctgctcacttggatttccag
tctcagcaaactcacatccttcagctgctccagcagggacacctcaaccaagctttccag
caggctctaacagcagctgatctcaacctggtcctgtatgtctgtgagactgtggatact
cagcaagtattcggacagcatccgtgcccgctgtcccagcctgtgctgctctctctcatt
cagcagctctcctcggatttgggtactcgtacggaactgaagttgaattacttggaggaa
gcggtgatgcacctggaccacagcgaccccatcacccgagaccacatggggtcagtcatg
aaccaggtgcggcagaagctcttccagttcctccaggtggaaccccacaacacactgagc
aagcctgcccgtcgcctcatgatcatgctccagggcctggtcacccccggcatgacctag
DBGET
integrated database retrieval system
