Nipponia nippon (crested ibis): 104017649
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Entry
104017649 CDS
T05756
Symbol
COL11A2
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-2(XI) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
nni
Nipponia nippon (crested ibis)
Pathway
nni04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nni00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
104017649 (COL11A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nni00536
]
104017649 (COL11A2)
Glycosaminoglycan binding proteins [BR:
nni00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104017649 (COL11A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
DnaJ_C
Motif
Other DBs
NCBI-GeneID:
104017649
NCBI-ProteinID:
XP_009468969
LinkDB
All DBs
Position
Unknown
AA seq
1252 aa
AA seq
DB search
EPVDVLKILQLHSLPEGVKKVPGFCSQRGAGSDVAYRITRQAQLSAPTRQLFAASRSEGC
PRWHLGDTSVSFPPQGDRGFDGLPGLPGDKGHRGETGSQGMPGPPGEDGERGDDGEVGPR
GLPGEAGPRGLLGPKGPPGIPGPPGVRGMDGPVGPKGNLGPQGEPGPPGQQGTPGTQVST
PISKVSLEEIYSGCTKKMKISHKRLNPDGKTVRNEDKILTIEVKRGWKEGTKITFPKEGD
QTPNNIPADVVFVLKDKPHGVFRREGSDIVYPAKISLREGHPGKEGPPGTKGNQGPSGPQ
GPIGXPRPRGVKGRGVDGIRGLKGHKGEKGEEGFPGFKGDMGVKGDRGEIGVPGSRGEDG
PEGPKGRTGPTGDPGPIGLVGEKGKLGVPGLPGYPGRQGPKVSVMAGAAGESGPMGERGH
PGPPGPPGEQGLPGPSGKEGTKGDPGPTGSPGKDGPAGLRGFPGERGLPPSQGGPGLKGN
EGPAGPPGPAGSPGERGGPGQGGPVGPPGRPGPQGPPGPAGEKGVPGEKGPMGPAGRDGV
QGPVGLPGPAGPPGGPGEDGDKGEVGEPGQKGSKGNKGEHGPPGPPGPIGSVGQPGAAGA
DGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPAGEKGETGDVGPMGPPGPPGP
RGPAGPSGADGPQGPPGGVGNLGPPGEKGDPGESGAPGIQGEPGVKGPRGERGEKGEAGA
AGAAGPPGGKGPPGDDGPKGNPGPVGFPGDPGPPGEMGPRGQDGAKGERGEDGEPGEPGS
PGPTGENGPPGPLGKRGPAGSPGPEGRQGEKGAKGEPGAVGAPGKTGPVGPQGLAGKQGP
DGLRGLPGSVGEQGKPGTTGQAGPPGPVGPPGLPGLKGDTGAKGEKGHPGLIGLIGPPGE
QGEKGDRGLPGPQGSTGQKGETGIPGATGPIGPAGPPGLPGPAGPKGAKGAMGQAGPKGE
RGPPGPPGHPGPPGEVIQPLPIQLPKKSKRSIDASKLVDEEEGEDGERPAADQASRDYAD
GMEEIFGSLNSLKQEIEGLRRPMGTRDNPARTCQDLQLSHPGLPDGEYWIDPNQGCARDS
FKVYCNFTAGGETCVFPSKDVQEVKMAAWEKEVPQRWFSQFQEGSRFSYTDSESQPLGVV
QLTFLRLLSVSARQNFTYHCHRSVAWHSTTSGDHQRALRFLAANEEELSYDTSPYIKAVM
DGCAARKGSSRTVLEVSTPRLEQLPLLDVRIMDFGEPGQRFGFEVGPVCFLG
NT seq
3761 nt
NT seq
+upstream
nt +downstream
nt
gagagcccgtggacgtgctgaagatcctccagctccactccctgcccgaaggcgtcaaga
aggtgccgggtttctgctcccaacgcggcgccggctccgacgtcgcctaccggataacgc
ggcaggcgcagctcagcgcgcccacccggcagctctttgccgcatcccgctccgaggggt
gtcctcggtggcacctcggtgacacctcggtgtccttccccccccagggtgaccgcggct
tcgacgggctaccagggctgccgggtgacaaaggccaccggggcgaaaccggctcgcagg
ggatgccgggaccccccggcgaggatggcgagaggggtgacgatggagaagtgggacccc
gaggactccccggagaagcgggacccagaggtctgctcggccccaaaggccccccgggaa
tccccggccccccgggcgtgcgtggcatggacggtcccgtcggtcccaaggggaacctgg
ggccgcaaggggagcccggaccccccggtcaacaggggaccccaggaacccaggtgagca
cccccatttcgaaggtctccctggaggagatctacagcggttgcaccaagaagatgaaga
tctcccacaagcgtctcaaccccgatgggaagacggtgcgtaacgaggacaagatcctca
ccatcgaggtgaagcggggttggaaggaaggcaccaagatcaccttccccaaggagggcg
accagacccccaacaacatccctgccgacgttgtctttgtcctcaaagacaaacctcatg
gcgtcttccgccgggagggctcggacattgtctacccggcgaagatcagcctccgcgagg
gtcatcccgggaaggagggaccccccggcaccaagggcaaccagggcccctcaggtcccc
agggccccatcggctaaccccgcccccgcggggtgaagggcaggggagtggacggcatcc
gggggctgaaaggacacaagggtgagaagggcgaggaaggcttccccggcttcaaggggg
acatgggcgtgaaaggagaccggggcgaaatcggcgtgccgggctcccggggtgaggacg
gacccgaaggtcccaagggacggacgggacccaccggtgaccccggtcccatcgggctgg
tgggagagaaggggaagctgggagtgccaggcctgcccggctacccaggacgtcagggtc
ccaaggtgagcgtgatggccggagccgctggcgaatctggccccatgggggagagaggcc
acccgggcccccccggccccccaggagagcaagggctaccgggaccatctggcaaggagg
gcaccaagggagaccccggccccactggctcccccgggaaggacggtcccgccggcttgc
ggggtttccccggtgagcggggtctgcccccctcgcagggcggcccagggctgaagggca
acgagggaccagcgggacccccaggacccgcaggctcccctggggagagaggtggcccgg
ggcaaggtggtcccgttggccccccaggacgaccaggaccacagggaccaccgggccctg
ccggagagaaaggagttcccggtgagaagggccccatgggtcccgctggccgggatggcg
ttcagggtcctgtgggtttacctggcccagccggcccccccggcggccccggggaggacg
gtgacaagggtgaggtgggcgagccgggacagaagggcagcaaaggcaacaagggcgagc
acggtcctcctggtccccctgggcccatcgggtcagtcgggcagcccggagccgctggtg
ccgacggggaaccgggtgccaggggtccccagggacatttcggggccaagggtgacgagg
ggacacggggcttcaacggtccccctggccccatcggcctccagggtttgccggggccgg
ctggtgagaagggtgaaacgggtgatgttggccccatgggcccgccgggccccccaggtc
cccgtggcccagctggaccctctggagctgacggaccccagggaccccctggaggtgttg
ggaacctgggacctcctggtgagaagggggaccccggtgaatcgggagccccgggaatcc
aaggggagccaggagtcaagggcccacgaggagagcgaggggagaagggagaagccggag
ctgccggtgctgctgggccacctggagggaaagggccccccggcgacgacgggcccaagg
gcaaccccggtcccgttggcttcccaggcgatcccggacccccaggtgaaatgggtccca
ggggccaggatggcgccaagggcgagcgtggggaggacggcgagcccggggagccgggct
caccgggtccgacaggcgagaacggtcctcctggtcccctggggaagaggggcccagctg
gctcccccggccccgaggggcgtcagggcgagaagggcgcgaagggagaaccaggcgcag
tgggtgctcctggcaagaccggtcccgtgggtccccagggccttgctgggaagcagggcc
ccgacggtctcagaggtctgcctggctcggtgggagaacaaggcaaaccgggtaccacag
gccaggctgggccaccaggaccggtgggtcccccgggtctccccggcctcaaaggtgaca
ccggtgccaaaggagagaagggccaccctggtctcatcggcctgatcggacccccagggg
agcagggggagaagggagaccgaggtctccccggcccccagggctccacggggcagaaag
gagaaactgggatccctggtgctactggacccatcggccccgccggcccccccggacttc
ccggcccagctggtcccaaaggtgccaagggagccatgggtcaagcaggacccaaaggtg
aacgtggacccccaggaccccctggacacccgggtccccctggggaggtgatccagcccc
tgccaatccagctgcccaagaagagcaagcgctccattgacgccagcaagctggtggacg
aagaggagggtgaggatggagagagacctgccgccgaccaggcgtctcgtgactacgccg
acggcatggaggagatcttcggctccctcaactccctcaagcaggagatcgaggggctgc
ggcgcccaatgggcacccgagacaaccctgcccgcacctgccaggacctgcagctcagcc
accctggcctgcctgatggcgaatactggattgaccccaaccaaggctgcgctcgagact
ctttcaaggtttactgcaacttcaccgcaggtggggagacctgcgtctttcccagcaagg
atgtacaggaggtgaagatggcggcgtgggagaaggaggtgccccagcggtggttcagtc
agttccaggagggcagcaggttctcctacacggactcggagagccagccccttggcgtgg
tgcagctgaccttcctacggctcctcagcgtctctgcccgccagaacttcacctaccact
gccatcgctcggtggcctggcacagcaccacctctggggaccaccagcgtgccctccgct
tcctggctgccaatgaggaggagctcagctacgacaccagcccctacatcaaagctgtga
tggacggctgcgcggcacggaagggctccagccgaacggtgctagaggtgagcacgcccc
gcctggagcagctcccgctgctggacgtgcgcatcatggacttcggcgagcccggccaga
ggtttgggttcgaggtgggcccagtctgtttcctcggctag
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