KEGG   Nipponia nippon (crested ibis): 104017768
Entry
104017768         CDS       T05756                                 
Symbol
HDAC1
Name
(RefSeq) histone deacetylase 1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
nni  Nipponia nippon (crested ibis)
Pathway
nni03082  ATP-dependent chromatin remodeling
nni03083  Polycomb repressive complex
nni04110  Cell cycle
nni04330  Notch signaling pathway
nni04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:nni00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    104017768 (HDAC1)
   03083 Polycomb repressive complex
    104017768 (HDAC1)
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    104017768 (HDAC1)
   04350 TGF-beta signaling pathway
    104017768 (HDAC1)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    104017768 (HDAC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:nni03036]
    104017768 (HDAC1)
Enzymes [BR:nni01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     104017768 (HDAC1)
Chromosome and associated proteins [BR:nni03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     104017768 (HDAC1)
   HDAC complexes
    Sin3A-HDAC complex
     104017768 (HDAC1)
    BRAF-HDAC complex
     104017768 (HDAC1)
    REST complex
     104017768 (HDAC1)
    SHIP complex
     104017768 (HDAC1)
    MiDAC complex
     104017768 (HDAC1)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     104017768 (HDAC1)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    104017768 (HDAC1)
  Chromatin remodeling factors
   NuRD complex
    104017768 (HDAC1)
SSDB
Motif
Pfam: Hist_deacetyl RNA_polI_A34
Other DBs
NCBI-GeneID: 104017768
NCBI-ProteinID: XP_009469103
LinkDB
Position
Unknown
AA seq 451 aa
MKPHRIRMTHNLLXXYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSK
QMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASG
FCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTG
DLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVISKVMETFQPSAVVLQCGSDSLSGD
RLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELP
YNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQPIPEDAV
QEDSGDEEEEDPEKRISIRNSDKRISCDEEFSDSEDEGEGGRKNVANFKKAKRVKTEEEK
EEEEKKDEKEEEKAKEEKAEPKGVKEETKST
NT seq 1356 nt   +upstreamnt  +downstreamnt
atgaagccccacaggatccggatgacccacaacctcctnnnnnnntatggcctctacagg
aagatggagatatatcgccctcacaaggcaaacgcagaagaaatgaccaagtaccacagt
gacgactacataaaatttctgagatctattcgcccagataacatgtctgagtacagcaag
cagatgcaaagatttaacgttggggaagactgccctgtgtttgatgggttgtttgaattt
tgtcagctctctgctggaggctcagttgccagtgctgtgaagctgaacaagcaacagaca
gatatcgctgtgaattgggcaggaggccttcaccacgcaaagaagtcggaggcttctggc
ttctgttacgtcaacgatatcgtcttagctatcttggagctcctaaagtatcaccagaga
gtgctgtacattgacattgatattcaccatggagatggcgtggaggaagccttttatacc
acagatcgtgtcatgaccgtgtcatttcataagtatggagaatacttcccaggaacaggg
gacctacgggatattggtgcaggcaaaggcaagtactacgctgtcaactatcccctccgg
gacggaattgatgatgagtcctatgaagcaatattcaagccggtgatatctaaagtgatg
gagacgttccagcctagcgcagttgtcttgcagtgcgggtcagactctctgtcaggggac
aggctgggttgttttaatctgaccatcaaaggtcacgccaagtgtgtggagtttgtaaaa
agttttaatttgcctatgctgatgctgggaggaggtggctatacgatccgcaacgtggct
agatgctggacctatgagactgctgtggctctggacactgaaattcccaatgaacttcca
tataatgactattttgagtactttggaccagactttaagctccacatcagtccctccaac
atgactaaccagaataccaacgagtatctcgagaagatcaagcagcgtctctttgagaat
ctgcgcatgctgcctcatgcccctggcgtccagatgcagccaattcctgaggatgctgtt
caggaagacagtggagatgaagaggaagaagatcctgagaaacgcatttcaatccgcaat
tccgataagagaatatcctgtgatgaagaattctctgactctgaagatgaaggggaagga
gggcgcaaaaatgttgccaactttaagaaagctaagcgtgtgaaaacagaagaggaaaag
gaggaagaggagaagaaagatgagaaagaagaagaaaaagcaaaagaggagaaagcagaa
cccaaaggggtgaaggaagagacgaaatccacctaa

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