Nipponia nippon (crested ibis): 104018105
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Entry
104018105 CDS
T05756
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
nni
Nipponia nippon (crested ibis)
Pathway
nni03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104018105 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nni03400
]
104018105 (MSH6)
DNA repair and recombination proteins [BR:
nni03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104018105 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
104018105
NCBI-ProteinID:
XP_009469485
LinkDB
All DBs
Position
Unknown
AA seq
1263 aa
AA seq
DB search
MEGYPWWPCLIYNHPTERTIVRGKGKSTRVHVQFFDDSPTRGWVSIKYLRPYKGSSDGET
LKGGMFYSTKPEIKRAMVLADDAMSKDKTKRLELAVCSEPSDTEEEEEEEMEQMSESASG
NSDDCNSEEDVKSNKRVVSRESAVKAKRRRVLDSDSDHDGSDVEFKPDVKEAASSEEASS
GVDENESTDTETDAESVAESPIKVPSKRKRKEINKPAKRSSLENVSSETPKRAATVSLEA
KSKLTSFAAPESFESQANACSGGIGGFTVWEHEKLDWLQEGKKKDAHRKRQGDPSYDPCT
LYVPEDYLNKCTPGMRRWWQLKSQNFDAVIFYKVGKFYELYHMDAVTGVNELGLIFMKGT
WAHSGFPETAFGRFSDVLVQKGYKVARVEQTETPEMMETRYKSMAHPTKFDKVVRREICR
IITKGTQTYSVLDCDPSENHNKYLLCVKEKEDSSGQRVYGVCFVDTSVGKFYVGQFSDDR
HCSRFRTLVAHYTPVQVLYEKGNLSVDTQKILKGSLVSCIQEGLISGSQFWNASKTLKVL
LEEGYFKEKQNSENGCPLPAVIKSLTSESDSLGLTPGENSELALSALGGCVFYLKKCLID
QELLSLANFEEYVPVDIDTAKTTSSSSFFAKTDQRMVLDGVTLMNLEVLQNGTNGTTEGT
LLERIDSCCTPFGKRLLKQWLCAPLCNPRSINDRLDAVEDLLAVPDKMSEVSEHLKKLPD
LERLLSKIHSIGSPLKSQNHPDSRAIFYEEIKYSKKKIADFLSALEGFKVMNEIVDAMEE
VASDFKSKILKQLVTRKAKHPDGRFPDLSAELKRWDTAFDHNQARKTGVITPKAGFDPDY
DKALQDIKAVEEDLHKYLDKQRKLLGFKSMLYWGAGKNRYQMEIPESAISRNLPEEYELK
STRKGYKRYWTKEIEKMLAAMVNAEERRDAALKDCMRRLFYNFDKNSKDWQTAVECIAVL
DVLMSLANYSQDGDGPLCRPVILLPVESAPPFLELKNSRHPCITKTFFGDDFIPNDIVIG
SKDEDSSSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRVFTRL
GASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVKELAE
KIRCRTLFSTHYHSLVEDYSHNVAVRLGHMACMVENESEDPSQETITFLYKFIEGACPKS
YGFNAARLADIPEEVIQKGHRKAKEFEKVTISLRIFRYLCRVVDGATRDANAVQKLTAMI
NHL
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atggaaggttatccttggtggccgtgtctcatatacaaccatccgactgaaagaacaata
gtcagaggaaaggggaaatctactcgtgtccatgtacagttttttgatgacagccctaca
aggggctgggtcagtattaaatatctgaggccatataaaggttcctcagatggggagaca
ctgaagggaggtatgttttatagtacaaagcctgaaattaaaagagcaatggtgctagcg
gatgatgcaatgagtaaagataaaactaagcggcttgagctggcagtatgcagtgaacct
tcagacacagaggaggaggaagaggaggaaatggagcagatgagtgaaagtgcatcaggc
aacagtgatgactgcaatagtgaggaggatgtgaagagtaataagcgagtagtgagcagg
gaaagtgccgtaaaagccaaaagaagaagagtgttggattctgacagtgatcacgatggc
tctgacgtagagttcaagcctgatgtgaaagaagcggcaagcagtgaggaagctagtagt
ggggtggatgaaaatgaatctactgacacagagacagacgcagagagtgttgcagaaagt
cccataaaagtcccttctaaacgaaagagaaaagaaataaacaagcctgctaaacggagc
agcttagaaaatgtaagttctgaaacacccaagagagcagcaacggtttctttagaagcc
aaatctaaactgacatcgtttgcagcacctgaaagttttgaatctcaagcaaatgcttgc
agtggaggcatcggtggcttcacagtatgggaacatgaaaagcttgattggctgcaggaa
gggaaaaagaaagatgcgcacaggaaacggcagggtgaccccagttatgacccgtgtact
ctgtatgtacctgaggactatctcaacaagtgtacgccaggaatgcggaggtggtggcag
ctgaaaagtcaaaactttgatgctgtgattttctacaaagttggaaaattctacgagttg
tatcatatggacgcagtcactggcgtaaatgagttgggcctgatctttatgaaaggtacc
tgggcccattcaggttttccagagactgcgtttggcagattctctgacgttctagtgcag
aaaggctacaaggtagcccgtgttgagcaaacagaaactcccgaaatgatggaaacgcgc
tacaagtcaatggcccacccaacaaaattcgacaaggttgtacgccgagaaatatgcaga
atcatcaccaaaggaactcagacttacagcgttctggactgcgatccctctgagaaccat
aacaaataccttctgtgcgttaaggaaaaagaagactcctctggacaacgtgtttatggg
gtctgctttgttgacacgtcggtggggaagttttacgtaggccagttctcagatgaccgg
cactgttcgaggtttaggactttagtagcccattacactcctgtgcaggtcctgtatgag
aaggggaacctatctgtggacacacagaagatactgaagggctcgcttgtttcttgcatt
caggaagggctgatctctggttcccagttctggaatgcatctaaaacactaaaggtcctt
cttgaagaaggatatttcaaggagaagcagaactctgaaaatggatgtcctctgcctgct
gttatcaaatctctgacttcagagagtgactcgctgggattaactcctggggaaaacagt
gaattagctttgtcggctcttgggggatgtgtcttctatctcaaaaaatgtctgattgat
caggagctgttatcgctggcaaacttcgaggagtatgtccctgtggatattgatactgca
aaaactacgagttcaagtagtttctttgccaaaactgaccagcggatggtgctggatgga
gtcaccctgatgaatctagaagtcctgcagaacggaaccaatggaaccacagaaggtact
ttgttggaaaggattgattcttgttgtacgccatttgggaagcgactcctgaaacagtgg
ctctgtgctccactttgtaatcccagatccatcaacgatcgtttggatgctgttgaggac
cttctggcagtgccagataaaatgtctgaagtcagtgagcacctgaagaaacttcctgac
cttgaaaggctgctcagcaaaattcacagtattggatcaccacttaaaagtcagaaccat
cctgacagcagggccatcttttatgaagaaatcaaatacagtaaaaaaaaaattgccgac
tttttgtctgcactggagggctttaaagtaatgaatgaaattgtcgatgccatggaagaa
gttgccagtgacttcaaatctaaaatccttaagcagctagtcacccgcaaagccaaacac
ccagacggccgcttcccagacttgagcgcagagcttaaaagatgggatactgcttttgat
cataaccaggctcgaaagacaggagtgattactccgaaggcgggctttgaccccgattat
gataaagcactacaggatattaaagctgttgaggaagatcttcacaagtacctggataag
caacgcaaactgcttggattcaaatccatgctgtactggggggcaggcaaaaaccgatac
caaatggaaataccggaaagtgcaatatcacgcaatttgcctgaggaatatgagttgaag
tcaaccaggaaaggatataagcgttactggaccaaggagatcgagaagatgctggctgcg
atggttaatgctgaagagcgcagagatgcagcactaaaagactgtatgaggaggctgttt
tacaactttgataaaaatagcaaagactggcagacagctgtggaatgcattgctgtgtta
gatgtcttgatgtcccttgctaactacagtcaagatggtgatggaccactgtgccgacct
gtaattctactgcctgtggagagtgctcctcccttcctggaacttaaaaattcacgccat
ccatgcattacaaaaactttctttggggatgattttattcctaatgacatcgtgataggc
agcaaagacgaagatagcagtagcgaagcttcctgtgtgttagtaactggcccgaatatg
ggtggcaaatctacgctcatgagacaggctggtctcctggttataatggctcaactggga
tgctacgtacctgctgaagtctgcaggcttacgccgatcgacagagtatttacgaggctt
ggtgcctcagacagaattatgtcaggtgaaagtaccttcttcgttgaattgagtgagact
tccagcattctccagcatgcaacagagcactcccttgttcttgtggatgaactgggcaga
ggcacagctacttttgacggaacagctatagcgagcgcagttgtgaaagaactggcggag
aaaatcaggtgtcggactctgttctccacacactaccactcgctggtagaggactactcg
cacaacgtggccgtgcggctcggtcacatggcatgtatggttgaaaatgagagcgaagat
ccaagccaggaaacaattacgttcctgtataagttcatcgaaggagcatgtccaaagagc
tatggcttcaatgcagcaagacttgctgacattccagaggaagttattcagaaggggcac
agaaaagcaaaagagtttgaaaaagtgaccatttcactgagaatatttaggtacctgtgc
cgggtggtggatggcgcaacgcgtgatgcaaatgctgttcagaaacttaccgctatgatc
aatcatctttaa
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integrated database retrieval system
