Nipponia nippon (crested ibis): 104018118
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Entry
104018118 CDS
T05756
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
nni
Nipponia nippon (crested ibis)
Pathway
nni03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104018118 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nni03400
]
104018118 (MSH2)
DNA repair and recombination proteins [BR:
nni03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104018118 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
104018118
NCBI-ProteinID:
XP_009469498
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All DBs
Position
Unknown
AA seq
914 aa
AA seq
DB search
MGLGAEMRATPSTGTVPPASAASPATTERAQLAPRGPHRPPLPWQRPGPGDGTQKLESVV
LSKMNFESFVRDLLLVRHYRVEVYKNKAGSKSIKENDWYLAYKGSPGNLAQFEEVLFANN
DMSTAIGVVGVKLSTTDGQRVVGVGYVDTTLRKLSVCEFPDNDQFSNLEALLVQLGPKEC
VLPGGETAGEMGKLRQVIQRGGILITDRKKADFTTKDIVQDLNRLLKSKKEEQMNSAALP
EMEKQVAVSSLSAIIKFLELLSDESNFGQFELTTFDLSQYMVLDNAAVQALNLFQSSVEN
ANTAQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVVDPELRQCLQED
LLRRFPDLNRLAKKFQRQAANLQDCYRMYQAINQLPNVVQALEKHEGAHQMLLLAVFITP
LNDIYSDFSKFLEMIETTLDMDKVENHEFLVKASFDPNLTELREKMNELEEKMQSFLKSA
AKELGLEAGKSIKLETNSQFGHHFRITCKEEKVLRNNSKYGIVDTQKNGVKFTNSKLSSV
NDEYIKNREEYEEAQDAIVKEIINIASGYAEPIQTMNDVIAQLDAIVSFAHVSNGAPVPY
VRPVILEKGQGRIVLKGARHPCIEVQDEVAFIPNDITFEKGKQMFHIITGPNMGGKSTYI
RQTGVIVLMAQIGCFVPCNSAEITVVDCILARVGAGDSQLKGVSTFMAEMLETASILRTA
SENSLIIIDELGRGTSTYDGFGLAWAISEYIACKIRAFCMFATHFHELTALADQVPTVNN
LHVTALTTDDTLTMLYRVKEGVCDQSFGIHVAELAAFPKHVIESAREKALELEEFQNIGK
SKESEGEPPAKKFYREREEGEKIIQDFLCQVKALPLTDMSEEDIKIKLKQLRNDVLAKNN
SFVNEIISRTKVTS
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atggggctcggcgccgagatgagggcgacaccgagcacgggcactgtgcccccggcctcg
gccgcctcgccggcgaccaccgagagggcgcagctcgccccgcggggccctcaccgcccg
ccgttgccatggcagcggccggggccgggggacggaactcagaagcttgagagcgttgtg
cttagtaaaatgaactttgaatctttcgtgagagatctgcttctggttcgtcattacaga
gttgaagtttacaagaacaaagcagggagcaaatctatcaaagaaaatgactggtattta
gcatacaagggttctccaggaaatcttgcccagtttgaggaagttctctttgccaacaat
gatatgtcaacggccattggggttgtgggggttaagctgtctactactgatggacaaaga
gtagtaggagtggggtatgtcgacactacgctgagaaaattgagtgtctgtgagttccca
gataatgatcagttctcaaacctcgaagctttactggttcaactaggaccgaaagagtgc
gtgctaccaggaggagagactgcaggagagatgggaaaattacgacaagtcattcagagg
ggaggaatcctgattacagacaggaagaaggcagatttcacaacaaaagatattgttcag
gatctcaatcgcttgttaaaatcaaaaaaagaagaacaaatgaatagcgcagcattgcca
gagatggaaaagcaggttgctgtttcgtctttgtcggccattatcaagtttttagagttg
ctgtcagatgagtctaattttggacaatttgaactgactacttttgatcttagtcaatac
atggttctagataatgcagctgttcaagccctcaacctttttcagagttctgtggaaaat
gctaacactgcacagtctctagctggtttactaaataaatgcagaacccctcaaggacaa
agactagttaatcagtggatcaaacaaccacttatggacaagaatcgaattgaagaaagg
ttgaatttggttgaagcttttgtggtggatccagaactacgtcagtgccttcaagaagat
ctcttacgtcgcttcccagaccttaaccggctggcaaagaaatttcagagacaagcagca
aacttacaggactgttaccgaatgtatcaggctattaatcaactgcctaatgttgtacaa
gcactagaaaaacatgaaggagctcaccagatgttgttgttggcagtgtttataacacct
cttaatgatatctactctgacttctcaaagtttctggagatgatagaaacaacattggac
atggataaggtagagaatcatgaatttcttgtcaaggcttcttttgatcctaatttgaca
gaattaagagagaagatgaatgaactggaagaaaaaatgcagtcctttttaaagagtgca
gccaaagaactaggtttggaagctggcaaaagtataaaactggagacaaattcacagttt
ggacatcactttcgaataacttgtaaggaggaaaaagttctccgtaacaattcaaaatat
ggaatagttgatacacagaagaatggtgtgaaatttactaacagcaaactgagctctgtc
aatgacgagtatataaagaacagagaagagtatgaagaggctcaggatgcaattgttaag
gaaatcattaacattgcttcaggttatgcagaaccaatacagacgatgaatgatgtgata
gctcaattagatgcaattgtcagttttgctcacgtgtcaaacggagcaccagtgccctat
gtccgtcctgtcattctggaaaagggacaaggaaggattgtgctgaaaggtgccaggcat
ccttgcatcgaagtgcaagatgaggtggccttcatccccaatgacattacatttgagaag
ggcaagcagatgttccacattattactggccctaacatgggggggaaatcaacctacatc
cgacagacaggggtgattgttcttatggcccaaattgggtgttttgtaccatgcaactct
gcagaaataactgttgtggattgtatcctggctcgggtgggagctggagacagtcagctg
aaaggcgtgtctactttcatggctgaaatgttagaaacggcttcaatccttaggacagca
tctgaaaactccctgataatcattgatgagctgggaagaggaacttctacctatgatggc
tttggcttggcatgggctatttcagaatacattgcttgcaaaatccgtgctttctgtatg
tttgctacacattttcatgaactgacagctcttgctgaccaagtgccaacagtaaataac
ctacatgttactgctctgaccactgatgacacattgacgatgctttatcgtgtcaaggaa
ggtgtttgtgaccagagttttggaatacacgtagcagagttggcagctttcccaaaacat
gtgatagaaagtgcaagagagaaagcattggagctggaggagtttcaaaacattggcaag
tccaaggaatctgaaggagaaccaccagccaagaaattctacagagaaagagaggaaggt
gaaaagataattcaggattttctttgtcaagtgaaagcgctgcccctgacagatatgtca
gaagaagacatcaaaatcaagctgaaacagctgagaaacgatgtgttggcaaagaacaac
agctttgtgaatgaaatcatttcccgaacgaaagttacatcatga
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