Nipponia nippon (crested ibis): 104018487
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Entry
104018487 CDS
T05756
Symbol
COL6A6
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-6(VI) chain
KO
K06238
collagen type VI alpha
Organism
nni
Nipponia nippon (crested ibis)
Pathway
nni04510
Focal adhesion
nni04512
ECM-receptor interaction
nni04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nni00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104018487 (COL6A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104018487 (COL6A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104018487 (COL6A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nni04147
]
104018487 (COL6A6)
00536 Glycosaminoglycan binding proteins [BR:
nni00536
]
104018487 (COL6A6)
Exosome [BR:
nni04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
104018487 (COL6A6)
Glycosaminoglycan binding proteins [BR:
nni00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104018487 (COL6A6)
Hyaluronan
Extracellular matrix or blood plasma proteins
104018487 (COL6A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
104018487
NCBI-ProteinID:
XP_009469910
LinkDB
All DBs
Position
Unknown
AA seq
2150 aa
AA seq
DB search
MKMLLAFFFILFIHMSVPQNTDSTDIVLLLSGQQDTGNYTFPYMKDFVSKLIYNLPLESD
QYRLALAQYNDDVREEYELDTCKTKQEMLMQVQDMQALQGGPLKTGNALCYIYERYFEEL
VNGADDRNQVLVVLSSLPSEDDVEVSAKMLQDNGIKVIALGIHESVVQQLSLMAMQSFFI
FLRXRDLPMFSXNVSNIIAEFQMDSIKELCDGDSVADIVFIADRGTSKSNFEELKKFLQS
LTSSLDVKEKCIRIGLVMYTDGQEVMSHLNTDTNKAEILQVIQNLSAGSGKANTGAAINV
TRLKLFSESAGSRKKQGVEQIAVLVTHRLSQDNVSDVATLLRRSGVTVFAIGVEDASDQQ
LVQIASYPQAQYVTKVKVFSDLQRENTIFRKKLLNQVQNKLYVHSERKEILKTGCQDTEE
ADIYFLIDGSSSLDYSDFVDMKNFLKEMIRLFYIGTNKVRFGLVQFSHFNELEFELNKYT
SASDLIKGIENVRQIGGNTSTGGALAYMKPLFEEARRQRGVTVPCHLVVLTDGESQDSVK
EPAMKLREDQVNIYAIGVREANETQLYEIAGVENRVHFVHDFDLLKDIKNEVVREICTTE
VCKEMKADIMFLVESSENIGDENFRKIKNFMIELVNITDVGADRVQVGVVQFSNRPKEEF
KLNTYATKRDIFSAIDRISPLQSTTLTGEALKFMLKYFQASSGSRHTVKKVLILITDAES
QDEVKAPATLLRDKGIIIYSVGVFNANKTQLEEISGKSEMVFYVENFDALSKLKRDLIFY
ICSSPPDDQCRRVERLDIVFVIDSSGSIGLQYQAMKDFMIALVKQSDVGPDGVQFGALKY
SDEPVLLFYLNDYTTKLEITEAIQRDELLGEATYTAKALGRSEMLFTEHHGSRKSKGVPQ
VLIVITDGESHDKAMLDDVSQRLRDKGITIYAIGVRGANRNELLTMAGSENKCFYVDTFE
GLENLTANITNNICNISVPDCPKKADVIFLVDGSRNIDEENFRIMMDFVTSVINPAVIAQ
NTKIGFALYGSVYKEEFNLGIFPNRSELEFRIRNIKQIEGQQSNIENALEKVKLSFQPEK
GSRIHENTQQILLVIIAGRTTTRAVRAAESLRKKGVDIYAIGVGNVDQSQLTQITGSSSR
KYAVDDFSNLKTIKKRLVDVICEDDNRKVACFVDITVGFDISSQREGHRLFHGQTKLEKH
FPDILQALLSLRDVSCNLGSKAQSSVAVQVKNTVTPISTKFYIDKDSVLRNLSDAVIKRP
SQLNVEFLQSLWETFQNKDETRQKVLLVFSDGMDDDLEALEQKSEELKKKGLAGLITVAL
EGASDFQNLRSIEFGKGFEYGTHLDIGMTDIASRLSKFLNNIAERTCCCLSCKCTGEEGE
MGAMGRRGIKGPNGVKGNLGYLGDEGEPGPRGPPGPGGRKGNMGCPGKRGLKGFRGFSGK
KGDNGEDGSDGIRGEEGSPGVPGKKGEKGDIGYPGSPGPRGPPGDRGQKGFRGDPGNPGL
NSAIVGKRGFAGEEGEEGERGQKGSRGSSGGVGNPGNRGQPGQYGLQGKQGYKGPQGQKG
SNGQKGQKGRPGPKGPPNEPGPVGLAGSPGAPGKTGIKGQPGDLGPKGKRGPYGMRGRQG
EDGAFGYGLLGEKGVKGEAGDKGIAGEPGLKGYRGRMGIQGPAGLKGSPGDRGSPGRRGR
KGLNGQALFSPCELIDYVRKHSPCWDGKLKCPVYPTELVFALDISRTLTPETFELMREIM
IAIVNDAIIRDSNCPVGTRVAVVSYNSVTHYLIHFSEFHNKNKLLNALRNISYQRSSSER
DTGSAMRFIARNVFKRTLQGPNVRKIAVVFSHGPATNASSVKQAVLEMSAVEVIPVVIAF
ENTPHISQAFLMDDSGLFQVLNVRGGQYNETLKRFLLCTLCYDKCKPDAFCERPRPRLPR
AYVDAAFILDSSQMSGAEFEQVKDFMSKAVTAFNISSAPKTSVVGDRIAVVSHALSDFKA
GTGKRPVKKEFDFVTYGTKDRIRIYIKESLQQLNGEAAVGYAIQWTIANIFSEAPNPRPL
KVIIIISAGKTSQWDKGILKRISLQAKCQGYALLVISLGKSYDRNELEELASTPLEQHLV
QLGRIHKSELDYVVRFLKPFIRFLRNEYNYPPEELKPKCSTLRFQSQRPV
NT seq
6453 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgctgctggcttttttcttcatccttttcatccacatgtctgttccccaaaac
actgatagtacagatattgtcctgttgctttctggccaacaggacacgggaaattacaca
tttccttacatgaaagactttgttagcaaattgatatacaatctgccactggaatctgac
caataccgtcttgcacttgcccagtacaatgatgatgttcgtgaagagtatgaactggac
acatgtaaaacaaagcaggagatgttgatgcaggtgcaagacatgcaagcattgcaaggt
gggccgctaaaaactggcaatgcactctgttatatttatgaaagatatttcgaagaactg
gttaatggagcagatgatagaaatcaggttttagtggtcctgtcttctttgccttctgaa
gatgacgtggaagtgtcagcgaaaatgttacaagacaatggaataaaagtgatagccctt
gggatacatgaatctgtggtgcaacagctgagcttgatggctatgcagtcattctttatt
ttcctaaganaaagggacctccctatgttttcttaaaatgtctccaatattattgcagag
ttccaaatggatagcattaaagaattatgtgatggagactcagttgctgacattgtgttt
atagctgatcgtggtacttcaaagtcaaacttcgaagaattaaaaaaattcctgcaaagc
ctaacatcctcattggatgtgaaggagaaatgcataagaattggcctggtgatgtacact
gatggacaagaagtgatgtctcatctgaacacagacacaaacaaagctgaaattctgcag
gtaatacagaacctttctgctgggtcaggaaaagccaacactggtgcagctattaatgtc
acaaggctaaagctctttagtgaaagtgctgggagcagaaagaagcaaggggtagagcaa
atagctgttctggttacccacagactttctcaagacaatgtgagtgatgttgctactctt
ctgcggagaagtggtgtgacagtgtttgccataggtgttgaagatgcttctgatcaacag
ctggtccagatagcctcttatcctcaagcgcagtatgttaccaaagtcaaggtattttct
gatctgcaaagggaaaatacgatttttcgaaagaagctcttgaatcaagtacaaaacaag
ctctatgtccactctgaaagaaaagagattctcaagacaggatgccaggacacagaagaa
gctgatatttatttcctcattgatggttcatcaagtcttgactactctgattttgtggat
atgaagaattttttgaaggaaatgatcaggctgttttacataggaacgaataaagttcga
tttggactcgtgcagttctcacatttcaatgaactggagtttgaacttaataagtacact
tcagcaagtgatttgataaaagggattgaaaatgttcggcaaataggtggaaataccagt
acagggggagctctagcttacatgaagccattgtttgaagaggccaggaggcagcgagga
gttacagtgccttgccatctagttgttctcacagacggagagtcacaggacagtgtgaag
gaaccagccatgaaactcagggaagaccaggttaacatttatgccattggtgtgagggaa
gctaatgaaactcagctttatgagattgcaggagtggaaaacagagtacactttgtacat
gattttgacttgctgaaagacattaaaaatgaagttgtccgagagatctgtaccacagaa
gtctgcaaagaaatgaaagctgatatcatgtttctagtggaaagttctgaaaatattgga
gatgagaattttcggaaaattaagaacttcatgatagagctggtgaacataacagatgtt
ggtgcagacagagtgcaggttggtgttgtccaattcagcaacagaccaaaggaagagttc
aagctcaacacctacgccaccaaaagagatatcttcagtgctattgataggatatctccc
cttcaatccaccacactgacaggagaagcactgaagttcatgcttaaatactttcaagcc
agtagtggttcacgtcacacagttaaaaaagttctcatcctgatcacagatgcggaatca
caagatgaagttaaagcccctgccacactactccgagataaaggcattatcatctactct
gttggagtttttaacgcaaacaaaactcagcttgaagagattagtgggaagagtgagatg
gtattctatgttgaaaattttgatgctctaagcaagttaaaaagggacctcattttttac
atttgcagtagtcctcctgatgatcaatgcagaagagtggagcgtttagacattgtgttt
gttatagacagctctggaagcataggcttacagtaccaggccatgaaagacttcatgatt
gccctggtgaaacaatctgatgtcggcccagatggagttcagtttggagcactaaaatat
tctgatgaaccagtactgctcttctacctcaatgactatactacaaaactagagattact
gaggctatccagagagatgaacttctaggagaagcaacttacacagcaaaggcactgggc
cgttcagaaatgttgttcactgaacaccatggcagccgcaagagcaaaggagttccccaa
gtgctgatagtgataactgatggggaatcccatgataaagccatgctggatgatgtgtcc
cagagattaagggacaaaggaattaccatctacgcaattggagtaagaggagcaaatcga
aatgagcttctgacaatggctgggtcagagaacaaatgtttctatgtggatacctttgaa
ggacttgagaacttaactgcaaatataacaaataatatatgtaatatttcagtaccagac
tgtccaaagaaagcagatgttattttcctagtggacggttccagaaacatagatgaagaa
aacttcaggataatgatggactttgtgacaagtgtaatcaatccagctgttattgctcaa
aataccaaaatcggctttgcactgtacggtagtgtctataaagaagagttcaacctaggc
atttttccgaacagatcagaactagaatttcgaattcgaaacatcaaacaaattgaagga
cagcaaagtaatattgaaaatgcacttgagaaagtgaaactcagcttccaaccagaaaag
ggtagcagaatacatgaaaatactcaacagattttactggtaatcattgctggacgaaca
accactagagctgtaagagcagcagaaagcctgaggaagaaaggtgttgatatatatgcc
ataggcgtgggaaatgttgatcagtcccagctaacacagataactggatcatcaagtagg
aaatatgccgttgatgacttttctaacttgaagaccataaaaaaaagactggttgatgtt
atttgtgaggatgacaatagaaaagtagcttgctttgtggatatcactgtgggatttgac
atctcatcacagagggaaggccaccgcttatttcatggacagaccaaactggaaaagcat
ttccctgacattttgcaagccctcctgtctctgagggacgtgagctgcaatcttgggtcc
aaggcacagagcagtgtggctgttcaagtgaagaatactgttactccaatatccacaaag
ttctacatcgacaaggattctgtcctgcgtaacctgtcagatgctgtgatcaagagacca
tcccaacttaacgttgaattcttgcagtcactctgggaaacatttcagaacaaggatgag
acccggcaaaaggtattacttgtgttttcagatggtatggatgatgacttagaagccctc
gaacaaaaatctgaagaacttaaaaagaaaggtttggctggtcttataactgttgctctg
gaaggagcctccgattttcaaaacctccgatccattgagtttggaaaaggatttgaatac
ggaactcacttagatattggcatgacagatatcgctagcaggctatccaagttcttgaac
aatattgctgagaggacctgctgctgtttgtcttgcaaatgtactggggaagaaggtgaa
atgggagctatgggaagacgagggataaagggacccaatggtgttaaaggcaacctggga
tatcttggcgatgaaggagaaccgggcccaagaggaccacctggaccaggaggaagaaaa
ggcaacatggggtgtccaggcaaaagaggtttaaaggggtttcgaggattttctggaaaa
aagggtgacaatggggaagatgggagtgatggaattagaggagaagagggatctcctggg
gttcctggaaagaaaggagaaaagggtgacattggatatccgggaagtccaggaccaaga
ggaccccctggtgatcgtggccagaagggctttcgaggagatcctggtaaccctggactg
aacagtgcaatagtaggaaaaagaggctttgcaggagaagagggggaagagggtgagaga
ggacaaaaaggctctcgtggctcatcaggaggcgtaggcaacccgggtaatcgtggacag
cctggtcagtatggcttgcaaggaaaacaaggatacaaaggacctcagggacaaaaaggc
agtaacggtcaaaaaggacagaaagggagaccaggacctaagggtcctccaaatgaacca
ggacctgtaggtctggcagggtctcccggagctcctgggaaaacaggaattaaaggacaa
cctggtgatctaggaccgaaaggaaaaagaggtccatatggtatgcgtggaaggcagggg
gaagatggtgcttttggatatggcctacttggagaaaaaggagtaaagggtgaagccggg
gacaagggaattgcaggggaacctggactaaaaggatatagaggcagaatgggtattcaa
ggacctgctggtctgaaaggcagtccaggagaccggggatctccaggacgcagggggcgt
aaaggactgaacggacaagccttattttctccatgtgaactcattgactacgtccgcaaa
cacagcccttgctgggatggaaaactgaaatgcccagtatatccaacagaactggtgttt
gccttggacatctctaggacactcactcctgagacttttgaactaatgagagagattatg
atagcgatagtgaatgatgccataatcagagacagcaactgcccagtgggaaccagagtt
gctgttgtttcctacaactcagttacccactacctgatccacttctcagagtttcacaac
aagaacaagctacttaacgcactaagaaatatttcttatcagagatcctccagtgaacgg
gacactggaagtgcgatgagattcattgccaggaacgttttcaagagaactctacaaggt
cctaacgtgagaaaaatagctgtggttttcagccatggaccagccacaaatgcatcttct
gttaaacaagccgtcctggagatgagtgcagtagaagtcattccagtagttattgctttt
gaaaacacaccccatatctcccaagctttcctgatggatgattctggattgtttcaggtg
ctaaatgttcgtggtggacaatataatgaaacgttaaaaagatttctgctctgcactttg
tgctatgacaaatgtaaaccagatgctttttgtgaacgtcccaggccccgtttaccgagg
gcatatgtggatgctgcattcattctggatagttcacagatgagtggtgctgaatttgag
caagtgaaagacttcatgagcaaagcagtcactgcattcaacatttcctcggctccaaaa
acatctgttgtaggggatagaatagctgtggtgagccatgccctgtcagatttcaaagct
ggcacagggaagaggccagtaaagaaagaatttgactttgttacctacggcactaaagac
cgaataagaatatatattaaagaatctcttcaacagctgaatggagaggctgctgttggc
tatgccatacaatggacaattgctaacattttctcagaggctcccaatccaaggccactc
aaagttatcatcattatatctgctggaaaaacgagtcaatgggacaaaggaatattaaaa
agaatttccctgcaggctaagtgccaaggctatgcactgcttgtgatttcactaggaaag
tcctatgacagaaatgaactggaagagctcgcaagcactcctctggaacagcatttggtt
cagcttggcagaatccacaagtctgaacttgactatgtagtgaggtttctgaagccattc
atacgtttcctcaggaatgagtacaactacccaccagaagagctcaagccaaagtgtagc
acactccgctttcagagccaaagacctgtgtaa
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integrated database retrieval system
