Nipponia nippon (crested ibis): 104018488
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Entry
104018488 CDS
T05756
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-4(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
nni
Nipponia nippon (crested ibis)
Pathway
nni04510
Focal adhesion
nni04512
ECM-receptor interaction
nni04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nni00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104018488
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104018488
09142 Cell motility
04820 Cytoskeleton in muscle cells
104018488
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nni04147
]
104018488
00536 Glycosaminoglycan binding proteins [BR:
nni00536
]
104018488
Exosome [BR:
nni04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
104018488
Glycosaminoglycan binding proteins [BR:
nni00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104018488
Hyaluronan
Extracellular matrix or blood plasma proteins
104018488
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
Motif
Other DBs
NCBI-GeneID:
104018488
NCBI-ProteinID:
XP_009469912
LinkDB
All DBs
Position
Unknown
AA seq
1495 aa
AA seq
DB search
MSSLVTEDLSVVSEFQLSSESQSRDAVFNLNPLPGQPFAARALSFARQRFSVNQGGCVSF
LAVTRILILTTDKRTAALGRVSLPPIAIKALKGGKINLTAVGVNKASRAELEEITEGQEX
LFAQTYDALPIKMLGNSASAMKMTVCSSQVADLVFLIDGSESISKSNFSVMKTFMLKVVD
SFVISRDKVHVGVVQYSQEPQKEFSLNEFYTDTMIKEQINRIKQLQSSAFTGKGLSLVQS
LFQPANGGRKSQGVSQNLVVITGGYSADRVKDAAMALRSDGIHVFAVGIGIINSFELLLI
AGDARRVFTVENFDALKTIERSIVNQVCESEDLPSQDCTTDLSIAVDISRHMWPGSTVLL
KQKLQAFFPKLLLHMKSLPNTSCNAGSPVNIRFKFQVLAQTKQFIFDSDFEDYNEEIIQK
FLDAQTTVDTYLNADFLKALEEKFFSATFAQVKVLLVFSDGLDDSLEDLRKAADSLRFKG
LDALLLVGLDNTQNLTELREIEFGRGFAYNEPLSVGFAEIANILQRNLDSVAERKCCKVV
CKCLGENGDHGGQGSPGRKGSTGYRGSPGHPGEEGGIGERGPVGFNGTQGDRGCPGARGH
KGARGYRGSQGEHGESGFDGTDGEQGEHGFPGPSGEKGNTGKRGRKGPRGEPGERGKSGL
RGDHGDPGASNNVPGPKGEKGNLAWQGDPGPRGLQGEQGDAGPDGAAGQRGPPGIKGERG
DLGEAGYPGDSGLPGPQGPRGLQGIRGPPGPQGMPGPLASLGAPGSPGSVGKLGARGAKG
EPGDPGEKGPVGPAGQRGMPGMNGRDAYGPEGSKGAKGESGLIGYPGPEGEDGDPGIPGA
EGPKGVRGRRGNSGTPGSLGDPGDQGPSGPMGAKGPMGTIVMEPCELVNFTRKNCPCSSD
TCPVYPTEVVFAFDMSEDVTPAVFERMRNIVMLLLKAIRISESNCPTGARVSVVSFNTNT
RYLIRFSEFQKSNMLLQAVQRIPLERSTEKRNIGAAMRFVARNVFKRVRQGILTRKVALF
FANGPSQDDVAISTAVLELSALDITPVVIAFSEVPNVRRAFSIDDTRRFQLLVWERQQDE
SLETITYCTLCFDKCKPSTNCEVPFSPPVLMDMDITYIMDSSRSISSEEFQRAKDFVSKM
LDQFVISSQPNESYGGIRVALVQQAPRGFLPDRNQTPVALEFDLVTYSNKDLMKKHIQES
VHQLEGPSAIASALQWTVENVFFKAPRQRKHRVIFAIVGSKTSTWDREELREISLGAKCQ
GFTLFTLALGNDVSDNQLMELSSPPTDQHLLTLGKFSTPEMVYAQRFSRAFLNLLQQEMN
SYPPPELQEECENLDEGDTQQEVSMIERIPFPGIDATGYGHGLEDIERTESRVLENIRET
TAELVYTIPEMRYGYGESEYFTEEDAEGEKPQEYGEAREENEENLEATVETRAAYSDYDA
CDLVQDSGECQNYILKWYYDKEQKMRGQFWYGGCGGNKNRFETQEECGFLCIESS
NT seq
4488 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctttagtcactgaggatttgagtgtagtatctgagtttcaactctcctctgag
tctcagagtagagacgcagtgttcaacttgaatcctctgccaggccagcccttcgcagca
agagctttgagctttgccaggcagagatttagtgtgaaccagggtgggtgtgtatctttc
cttgctgtcaccaggatccttattcttactactgataaacgaactgcagcattgggtaga
gtcagccttccgcccatagctataaaagctttgaagggaggtaaaatcaacttaacagct
gttggagtgaacaaagcaagcagagcagaacttgaagagattactgaaggtcaagaanng
ctctttgcacagacctatgatgcattgccgataaaaatgttggggaactctgcttctgca
atgaaaatgacagtttgcagcagtcaggtggcagatctggtattcctgatagatggatca
gaaagcatatcaaaaagtaacttttctgtcatgaagaccttcatgttgaaagttgtggac
agctttgttatttctagggacaaagtacatgttggagtagtccagtacagccaagagccc
cagaaagaattttctcttaatgagttctatactgacaccatgataaaggaacagatcaac
agaatcaagcaactgcagtcctctgcgttcactggcaaagggctgagccttgtccagagc
ctttttcagcctgccaatggaggccgcaagagtcaaggagtctcacagaaccttgtagtg
attacaggcgggtactctgctgacagggtgaaggatgcagcaatggctttgagaagtgat
gggatccatgtctttgcagttggcatagggattataaactcctttgagctgcttttaata
gctggtgatgcaaggagagtgttcacagtggaaaacttcgatgcactgaaaaccatcgag
aggagtattgttaatcaggtctgtgaatccgaagatcttcctagccaggattgcaccaca
gatctttctatagcagttgatatttcaaggcacatgtggccaggatccacagtgcttctg
aaacagaaattgcaagcattcttccccaagcttttactccatatgaaatcgctgccaaat
accagctgtaatgctggctctccagtcaacattagattcaagttccaagtattggcacag
accaaacaattcatctttgactctgattttgaagactataatgaagagatcatccagaag
ttcttagatgcacagaccactgtggacacctacctgaatgcagacttcttaaaggcactt
gaggagaagttctttagtgcgacctttgctcaagttaaggttctcttagtattttcagat
gggctggatgattcgctggaagatctcagaaaagcagctgattcacttcgctttaaaggt
cttgatgcacttctgttagttggcctggacaatacacagaacttgactgaacttcgggaa
atagagtttggcagagggtttgcatacaatgaacctctgagtgttgggtttgcagagatt
gcaaacatcttgcagagaaatcttgatagtgttgcggaaaggaaatgctgtaaggttgtt
tgtaaatgccttggagaaaatggtgatcatggtggccagggaagtcctggaaggaaggga
agcacaggttacagaggatctcctggccatcctggtgaggaaggtgggattggggagaga
ggcccagttggtttcaatgggactcaaggagacaggggatgtccaggtgccagaggccat
aagggggccagaggctatagaggaagtcagggtgaacatggtgagagtggatttgatggc
actgatggagagcagggagaacacggatttcctggaccttctggagagaaaggcaacaca
ggaaaacggggcagaaaaggccccagaggagaaccaggtgaacgaggaaaatctggtcta
agaggagatcatggagatcctggggctagcaataatgttcctggtcctaagggtgaaaag
ggaaacctagcatggcagggagacccaggaccacgtggactccaaggagaacagggtgat
gctggccctgatggcgcagcaggtcaaagaggccctccgggtataaagggtgagcgagga
gatctgggggaagcaggttacccaggagactctggtcttccaggcccacagggcccaaga
ggactacaagggatcagaggacctccaggaccacaaggcatgccaggccctctggctagt
ctgggggccccaggttcacctggctctgttgggaagttaggtgcaagaggagcaaagggt
gaacctggtgaccctggagagaagggcccagtgggaccagctggacagagaggcatgcct
ggcatgaatggcagagatgcctacggtcctgaagggagcaaaggagcaaagggagaatct
ggacttataggatatcccggtccagagggagaagatggggacccgggtattccaggagct
gaaggacccaaaggagttaggggtagaagaggtaattctggcacaccaggttccctggga
gatccaggggaccaagggccatcaggacctatgggtgccaagggaccaatgggcaccatt
gtaatggaaccttgtgaacttgtgaattttacacgaaaaaactgcccttgctcatcagat
acatgcccagtttatccaactgaagtggtgtttgcctttgatatgtccgaagatgttacg
ccagctgtgtttgaaagaatgaggaacattgttatgttattgctgaaggccattaggatc
agtgaaagcaattgcccaacaggcgctcgtgtctctgttgtttctttcaataccaatacg
cgctatctcatccgattctcagaattccaaaaaagcaacatgctgctacaagcagtccag
agaataccgctagagagatccactgaaaaacgtaatattggggcagccatgagatttgtt
gcaagaaatgtcttcaaacgtgttcgtcagggcattctcacaagaaaagttgccctattt
tttgccaacggtccatcgcaggatgatgttgctatcagcacagctgtacttgagttgagt
gccttggatatcactccagtggttattgccttcagtgaagtgccaaatgtcagacgtgcc
ttctcaattgatgatactagaagatttcaattattggtttgggaaagacaacaggatgaa
agtttggagaccatcacgtattgtacactttgcttcgataaatgcaagccaagtaccaac
tgcgaggtgcccttttctccccctgttctgatggatatggatatcacttacatcatggac
agctctcgcagcatcagcagtgaagagtttcagagagccaaagactttgtgagcaaaatg
ctagatcagtttgtcatttcctcacagccaaatgaatcatatggaggcatcagagtggca
ctggtgcagcaggctcccaggggcttcctgcctgacagaaaccagacccctgtggccttg
gagtttgatctagtcacatacagcaataaagatttgatgaagaaacatatccaagagtct
gttcaccaactggaagggccatcagccattgcttctgccctacagtggacggttgaaaat
gtattctttaaagcccccagacaaagaaaacacagggtcatatttgcaatagttggaagc
aaaacaagcacgtgggacagagaggagctgagagagatttcactcggagccaagtgccaa
ggattcaccttgttcactcttgcgcttggcaatgatgtgagtgacaatcagctgatggag
ctgtcaagcccccccacagaccagcacttactcacattgggcaagttttcaacacctgag
atggtatacgctcagaggtttagccgggcatttctaaatcttctacaacaagaaatgaac
agttatcctccacctgaacttcaagaagagtgtgaaaacttagatgagggagacacacaa
caggaagtgtctatgattgaaaggatcccttttcctggaattgatgcaactggttacggt
catggtttagaagacattgaaagaactgaaagtagagtcctggagaatattagagagacc
actgcagaacttgtgtacacgataccagaaatgagatatggttatggggagagtgagtat
ttcacagaggaagatgctgaaggagaaaagccacaagagtatggagaagctcgggaggag
aacgaggaaaacttagaggcaacagtagaaactagagctgcctatagtgactatgatgcg
tgtgaccttgttcaagatagtggagaatgtcagaattacattctgaagtggtactatgac
aaagagcagaaaatgcgtggtcagttctggtacgggggctgtggaggcaataaaaataga
tttgaaacgcaggaagaatgtggattcttgtgtatagagtcttcctag
DBGET
integrated database retrieval system
