KEGG   Nipponia nippon (crested ibis): 104018627
Entry
104018627         CDS       T05756                                 
Symbol
ALYREF
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
nni  Nipponia nippon (crested ibis)
Pathway
nni03013  Nucleocytoplasmic transport
nni03015  mRNA surveillance pathway
nni03040  Spliceosome
nni05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:nni00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104018627 (ALYREF)
  09122 Translation
   03013 Nucleocytoplasmic transport
    104018627 (ALYREF)
   03015 mRNA surveillance pathway
    104018627 (ALYREF)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    104018627 (ALYREF)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nni03019]
    104018627 (ALYREF)
   03041 Spliceosome [BR:nni03041]
    104018627 (ALYREF)
Messenger RNA biogenesis [BR:nni03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     104018627 (ALYREF)
    TREX complex
     104018627 (ALYREF)
Spliceosome [BR:nni03041]
 Complex C
  Other components
   EJC/TREX
    104018627 (ALYREF)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    104018627 (ALYREF)
SSDB
Motif
Pfam: FoP_duplication
Other DBs
NCBI-GeneID: 104018627
NCBI-ProteinID: XP_009470059
LinkDB
Position
Unknown
AA seq 133 aa
MKQYNGVPLDGRPMNIQLVTSQIDTQRRPAQSVNRGGMTRNRGGSGFGGGGGNRRGTRGG
NRGRGRGAGRTSKQQLSAEELDAQLDAYNARVSAAWALSTGSPRHLGLGNVGSPEPAGKR
QRFPGHWTKAVSL
NT seq 402 nt   +upstreamnt  +downstreamnt
atgaagcagtacaacggagtccccttggacggacgccccatgaacattcagctggtcacg
tcacagatcgacacacagaggagaccggcacagagtgtaaacagaggtggcatgaccaga
aaccgtggtggttcaggatttggtggtggaggaggcaacaggcgaggtactcgtggcggg
aacagagggagaggcagaggagctggaagaacttccaaacagcagctctccgcagaagaa
ctagatgcacagctggatgcttacaatgccagggtaagtgctgcttgggcgctgtccaca
ggctccccgcggcatctcggtctgggaaacgtgggcagcccggagccggcaggaaagaga
cagcgtttcccaggtcattggactaaagcggtctccctctaa

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