Nipponia nippon (crested ibis): 104020265
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Entry
104020265 CDS
T05756
Symbol
SUPT5H
Name
(RefSeq) LOW QUALITY PROTEIN: transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
nni
Nipponia nippon (crested ibis)
Pathway
nni03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
nni00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
104020265 (SUPT5H)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nni03021
]
104020265 (SUPT5H)
03019 Messenger RNA biogenesis [BR:
nni03019
]
104020265 (SUPT5H)
Transcription machinery [BR:
nni03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
104020265 (SUPT5H)
RNA polymerase I system
104020265 (SUPT5H)
Messenger RNA biogenesis [BR:
nni03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
104020265 (SUPT5H)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW5_SPT5
KOW2_Spt5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
DUF3912
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
104020265
NCBI-ProteinID:
XP_009471926
LinkDB
All DBs
Position
Unknown
AA seq
1124 aa
AA seq
DB search
AEEEHAGAAGSEKEEAEEEEEEEEEEYDEEEEEEDDDRPAKKPRHGGFILDEADVDDEYE
DEDQWEDGAEDILEKEEIEASNIDNVVLDEDRSGARRLQNLWRDQREEELGEYYMKKYAK
SSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKCKIGEERATAIALMRKFIAYQFTD
TPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRMGYWNQQMVPIKEMTDVLKVV
KEVTNLKPKSWVRLKRGIYKDDIAQVDYVEPSQNQISLKMIPRIDFDRIKARMSLKDWFA
KRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFEGNRYSRKGFLFKSFAMSAVITEGVK
PTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQPGDNVEVCEGELINLQGKILSVDGNK
ITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLT
MHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVLNMYGKV
VTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRGFAFLHCK
KLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVGGFAPMSPRISSPMHPSGAGQRGGFGGG
GMSRGRGRRDNDLIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTT
VGSRRPGGMTSAYGRTPMYGSQTPMYGSGSRTPMYGSQTPLGTQSRTPHYGSPTPPHDGS
RTPAQSGAWDPNNPNTPSRADEDFEYGFDDEPTPSPQGYGGTPNPQTPGYPDPSSPQVNQ
PYNPQTPGTPAMXSAPSAPPQAPGDPEPQLGGETAPGGPQTTYSPPTPSNAASSLSCQAS
PSPSPVGYSPMTPGAPSPGGYNPHTPGSGIEQSSSDWVTTDIQVKVRDTYLDSQAVGQTG
VIRSVTGGMCSVYLKDSEKVVSISSEHLEPVTPTKSNKIPDEFDGDPVGIQQLRRTYKYF
KDYRQMIIEPTSPKLLPDPLSDDRALYDLPAFLKTIALSGVEDVRTVLENYALEEDPLAA
FKRRRSQLEEEEQQRLAELAQGKKPTGLFLGALAGRLWPRSKQQ
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
gccgaggaggagcacgccggtgcggctggcagcgagaaggaggaggccgaggaggaggag
gaggaagaggaggaggagtatgacgaggaagaagaggaggaagatgacgaccgaccggcc
aaaaagccgcgccatggcggcttcatcctggatgaagctgacgtggacgacgagtacgag
gatgaggaccagtgggaggacggggccgaggacatcctggagaaagaagagatcgaagct
tccaacattgataacgtggtgctggatgaggatcgctccggcgctcgacggctgcagaac
ctctggagggaccagcgtgaggaagagttgggcgagtattatatgaagaaatacgccaag
tcctcggtgggagagaccgtttacggtggctctgacgagctctcagacgacatcacgcaa
cagcagctgctgcctggagtcaaggaccccaatctctggaccgtgaagtgcaagataggc
gaggagcgtgccacggccatcgccctcatgcggaaattcatcgcttaccagttcaccgac
acgcccctgcagatcaagtcggtggtggcccccgagcacgtcaagggttacatctacgtg
gaagcctacaagcagacgcacgtcaagcaggcgatcgagggggtgggcaacctgcgcatg
ggctactggaaccagcagatggtccccatcaaggagatgaccgacgtcctcaaggtggtg
aaggaggtcaccaacctcaagcccaaatcttgggtgcgcctcaagagggggatctacaag
gatgacatcgcccaggtggattatgtggagcccagccagaaccagatttccctcaagatg
atcccccgcatcgacttcgaccggatcaaagcccgcatgagcctgaaagactggttcgcc
aagaggaagaagttcaagcgacccccgcagcggcttttcgatgccgagaagatccggtcc
ctgggaggtgacgtggcatccgacggggactttctcatcttcgaaggcaaccgttacagc
cgcaagggattcctcttcaagagctttgccatgtcggccgtgataacagagggcgtgaag
cccactctgtcagagctggagaagttcgaggaccaacccgaaggcatcgacctggaggtg
gtaacggaaagcacagggaaggaacgagagcacaacttccagcctggtgacaacgtggag
gtgtgcgagggtgagctgatcaaccttcagggcaaaatcctcagcgttgacggcaacaag
atcaccatcatgcccaaacacgaggacttgaaggacatgctggagttcccagctcaggag
ctgcggaagtatttcaagatgggtgaccacgtcaaagtgatcgcggggcgttttgagggc
gacacggggcttatcgtgagggtggaggaaaacttcgtcatcctcttctccgacctcacc
atgcacgagctcaaggttctgccacgagacctgcagctctgctcagagacggcgtctggc
gtggacgtgggggggcagcacgagtggggtgagctggtgcagctggatccccaaaccgtg
ggtgtcatcgtccgtctggagcgggagaccttccaggtgctgaacatgtacgggaaggtg
gtgacggtgcggcaccaggctgtcaccaggaagaaggacaaccgcttcgccgttgccctc
gactcggagcagaacaacatccacgtcaaggacatcgtcaaagtcatagatgggcctcac
tcgggccgcgagggggagatccggcacctctttcggggcttcgccttcctgcactgcaag
aagctggtggagaacggcggcatgttcgtctgcaagacccggcacctcgtcctggcgggc
ggctccaagccacgggacgtcaccaacttcaccgtgggtggcttcgcccccatgagtccc
cgtatcagcagcccgatgcaccccagcggggctggccaacgcggtggtttcggcggcggc
ggcatgagccgtggccgcgggcggcgggataacgacctcattgggcagacggtgcgcatc
tcccaaggaccctacaaaggctacatcggggtggtgaaggacgcgacggagtcgacggcc
cgcgtggagctgcactccacctgtcagaccatctcggtggaccgccagcgcctgaccact
gtgggctcacggcgcccgggtgggatgacgtcggcctacgggcgcacccccatgtacggc
tcgcagacccccatgtacggctccggctcccgcacccccatgtatggctcgcagaccccc
ctggggacacagagccgcacgccgcactacggctccccaacccccccgcacgacgggagc
cgcacacccgcccagagcggcgcctgggaccccaacaaccccaacacaccctccagggcc
gacgaggacttcgagtatggctttgatgacgagcccacgccctcgccacagggctacggg
ggcacccccaacccgcagacccccggctaccctgacccttcgtccccccaggtcaaccag
ccctacaacccccagacccccggcacgccggccatgntgagtgctccctctgccccaccg
caggccccgggggaccccgaaccgcagctcgggggggaaactgctcctgggggaccccaa
accacctatagcccccctaccccctctaacgctgcctcctctctctcctgccaggccagc
cccagccccagcccggtgggctacagccccatgactcccggggccccctccccggggggg
tacaacccccacacccccggatcggggatcgagcagagctccagcgactgggtgaccacc
gacatccaggtgaaggtccgtgacacctacctggacagtcaggcggtgggacagaccggt
gtcatccgcagcgttacgggcgggatgtgctctgtctacctgaaggacagcgagaaggtg
gtgagcatctccagcgagcacctggagcccgtcacccccaccaagagcaacaagatcccc
gatgagttcgatggcgaccccgtgggcatccagcagctccgcaggacctacaagtacttc
aaggactacaggcagatgatcatcgagcccaccagccccaagctgctgccggaccccctc
tccgatgaccgtgcgctctacgacctccccgctttcctcaaaaccattgccctcagcggg
gtggaagatgtccggacggtgctggagaattacgcgctggaggaggatccgctggcggct
tttaaacgacgccggtcgcagctggaggaggaggagcagcagcgcctggccgagctggcg
cagggcaagaagccgacggggctcttcctgggtgccctggccggccgtctctggccgcgc
tccaagcagcagtga
DBGET
integrated database retrieval system
